Hb_002067_020

Information

Type -
Description -
Location Contig2067: 6059-8682
Sequence    

Annotation

kegg
ID rcu:RCOM_0211530
description hypothetical protein
nr
ID XP_002533350.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T531
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0211530 PE=4 SV=1
Gene Ontology
ID GO:0009570
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21286: 6023-8877 , PASA_asmbl_21287: 6132-8911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002067_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000523_090 0.0647536843 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
3 Hb_000364_080 0.0794126375 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
4 Hb_031862_180 0.0944285504 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
5 Hb_003363_010 0.0965883055 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000364_060 0.103699477 - - JHL03K20.4 [Jatropha curcas]
7 Hb_134364_010 0.1068217653 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
8 Hb_002174_060 0.1079034274 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
9 Hb_002942_160 0.1112123011 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
10 Hb_010423_020 0.1113372218 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
11 Hb_010642_030 0.1130226629 - - zinc phosphodiesterase, putative [Ricinus communis]
12 Hb_000077_090 0.1132701407 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000316_030 0.1136327837 - - zinc finger protein, putative [Ricinus communis]
14 Hb_002107_160 0.1137114269 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
15 Hb_000088_020 0.1146289201 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
16 Hb_001863_110 0.1152135188 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
17 Hb_003405_050 0.1204124098 - - -
18 Hb_000120_500 0.1211423779 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
19 Hb_005608_030 0.1212181336 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
20 Hb_007643_050 0.1218083515 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002067_020 Hb_002067_020 Hb_000523_090 Hb_000523_090 Hb_002067_020--Hb_000523_090 Hb_000364_080 Hb_000364_080 Hb_002067_020--Hb_000364_080 Hb_031862_180 Hb_031862_180 Hb_002067_020--Hb_031862_180 Hb_003363_010 Hb_003363_010 Hb_002067_020--Hb_003363_010 Hb_000364_060 Hb_000364_060 Hb_002067_020--Hb_000364_060 Hb_134364_010 Hb_134364_010 Hb_002067_020--Hb_134364_010 Hb_000523_090--Hb_000364_080 Hb_002174_060 Hb_002174_060 Hb_000523_090--Hb_002174_060 Hb_010423_020 Hb_010423_020 Hb_000523_090--Hb_010423_020 Hb_000523_090--Hb_000364_060 Hb_004195_280 Hb_004195_280 Hb_000523_090--Hb_004195_280 Hb_002942_160 Hb_002942_160 Hb_000364_080--Hb_002942_160 Hb_002044_060 Hb_002044_060 Hb_000364_080--Hb_002044_060 Hb_000364_080--Hb_134364_010 Hb_010642_030 Hb_010642_030 Hb_000364_080--Hb_010642_030 Hb_002716_140 Hb_002716_140 Hb_031862_180--Hb_002716_140 Hb_007643_050 Hb_007643_050 Hb_031862_180--Hb_007643_050 Hb_187739_020 Hb_187739_020 Hb_031862_180--Hb_187739_020 Hb_031862_180--Hb_000364_080 Hb_008695_120 Hb_008695_120 Hb_031862_180--Hb_008695_120 Hb_001863_110 Hb_001863_110 Hb_003363_010--Hb_001863_110 Hb_000679_150 Hb_000679_150 Hb_003363_010--Hb_000679_150 Hb_003434_060 Hb_003434_060 Hb_003363_010--Hb_003434_060 Hb_001609_010 Hb_001609_010 Hb_003363_010--Hb_001609_010 Hb_000316_030 Hb_000316_030 Hb_003363_010--Hb_000316_030 Hb_003363_010--Hb_002174_060 Hb_002272_180 Hb_002272_180 Hb_000364_060--Hb_002272_180 Hb_007668_040 Hb_007668_040 Hb_000364_060--Hb_007668_040 Hb_000364_060--Hb_002174_060 Hb_004198_010 Hb_004198_010 Hb_000364_060--Hb_004198_010 Hb_001341_050 Hb_001341_050 Hb_000364_060--Hb_001341_050 Hb_004450_010 Hb_004450_010 Hb_000364_060--Hb_004450_010 Hb_008253_010 Hb_008253_010 Hb_134364_010--Hb_008253_010 Hb_001863_260 Hb_001863_260 Hb_134364_010--Hb_001863_260 Hb_009265_080 Hb_009265_080 Hb_134364_010--Hb_009265_080 Hb_134364_010--Hb_010423_020 Hb_134364_010--Hb_002942_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
141.263 42.606 30.6168 49.0983 106.629 237.474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.619 69.4471 34.0299 37.0864 71.3767

CAGE analysis