Hb_002067_070

Information

Type -
Description -
Location Contig2067: 50545-53154
Sequence    

Annotation

kegg
ID rcu:RCOM_0211400
description glucose-1-phosphate adenylyltransferase, putative (EC:2.7.7.27)
nr
ID KDP29541.1
description hypothetical protein JCGZ_19254 [Jatropha curcas]
swissprot
ID F4I8U2
description Inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APS2 PE=1 SV=1
trembl
ID A0A067JZY9
description Glucose-1-phosphate adenylyltransferase OS=Jatropha curcas GN=JCGZ_19254 PE=3 SV=1
Gene Ontology
ID GO:0008878
description glucose-1-phosphate adenylyltransferase small chloroplastic amyloplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002067_070 0.0 - - hypothetical protein JCGZ_19254 [Jatropha curcas]
2 Hb_004162_200 0.0622881351 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
3 Hb_009151_010 0.0771445823 - - Peroxidase 3 [Morus notabilis]
4 Hb_005295_030 0.0876736331 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
5 Hb_000680_100 0.0886388683 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_002311_030 0.0940591462 - - conserved hypothetical protein [Ricinus communis]
7 Hb_050898_040 0.0972279445 - - -
8 Hb_007113_060 0.1009916527 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
9 Hb_000531_030 0.1082165125 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002783_100 0.1096070744 - - Zeamatin precursor, putative [Ricinus communis]
11 Hb_000227_290 0.1097852784 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
12 Hb_015175_070 0.110378206 - - cysteine protease, putative [Ricinus communis]
13 Hb_005116_150 0.1109247006 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
14 Hb_031984_020 0.1112384121 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005614_060 0.1137814114 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
16 Hb_093084_030 0.1142197787 - - oleosin2 [Plukenetia volubilis]
17 Hb_132381_010 0.1146380257 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_011082_030 0.1149551071 - - hypothetical protein RCOM_0852210 [Ricinus communis]
19 Hb_005440_040 0.1151735431 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
20 Hb_006977_010 0.1155895696 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_002067_070 Hb_002067_070 Hb_004162_200 Hb_004162_200 Hb_002067_070--Hb_004162_200 Hb_009151_010 Hb_009151_010 Hb_002067_070--Hb_009151_010 Hb_005295_030 Hb_005295_030 Hb_002067_070--Hb_005295_030 Hb_000680_100 Hb_000680_100 Hb_002067_070--Hb_000680_100 Hb_002311_030 Hb_002311_030 Hb_002067_070--Hb_002311_030 Hb_050898_040 Hb_050898_040 Hb_002067_070--Hb_050898_040 Hb_004162_200--Hb_002311_030 Hb_007113_060 Hb_007113_060 Hb_004162_200--Hb_007113_060 Hb_004162_200--Hb_005295_030 Hb_004162_200--Hb_009151_010 Hb_004162_200--Hb_050898_040 Hb_009151_010--Hb_002311_030 Hb_005116_150 Hb_005116_150 Hb_009151_010--Hb_005116_150 Hb_009151_010--Hb_007113_060 Hb_000531_030 Hb_000531_030 Hb_009151_010--Hb_000531_030 Hb_002092_060 Hb_002092_060 Hb_005295_030--Hb_002092_060 Hb_006977_010 Hb_006977_010 Hb_005295_030--Hb_006977_010 Hb_015175_070 Hb_015175_070 Hb_005295_030--Hb_015175_070 Hb_002309_020 Hb_002309_020 Hb_005295_030--Hb_002309_020 Hb_004899_230 Hb_004899_230 Hb_005295_030--Hb_004899_230 Hb_000680_100--Hb_015175_070 Hb_000336_120 Hb_000336_120 Hb_000680_100--Hb_000336_120 Hb_000680_100--Hb_002092_060 Hb_000680_100--Hb_005295_030 Hb_000680_100--Hb_009151_010 Hb_002311_030--Hb_007113_060 Hb_002740_140 Hb_002740_140 Hb_002311_030--Hb_002740_140 Hb_057862_010 Hb_057862_010 Hb_002311_030--Hb_057862_010 Hb_162450_010 Hb_162450_010 Hb_002311_030--Hb_162450_010 Hb_029883_010 Hb_029883_010 Hb_050898_040--Hb_029883_010 Hb_004686_040 Hb_004686_040 Hb_050898_040--Hb_004686_040 Hb_000020_170 Hb_000020_170 Hb_050898_040--Hb_000020_170 Hb_002783_100 Hb_002783_100 Hb_050898_040--Hb_002783_100 Hb_050898_040--Hb_005295_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.01374 0.366884 1.46596 0 0.0242086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00987585 0.413947

CAGE analysis