Hb_002067_100

Information

Type -
Description -
Location Contig2067: 73201-75371
Sequence    

Annotation

kegg
ID rcu:RCOM_0211390
description hypothetical protein
nr
ID XP_002533346.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T527
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0211390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21292: 73833-75393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002067_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003032_100 0.1975463894 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
3 Hb_000012_230 0.1998356968 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
4 Hb_004333_030 0.2064840176 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
5 Hb_000896_120 0.208622303 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
6 Hb_088202_010 0.2095577819 - - hypothetical protein JCGZ_13241 [Jatropha curcas]
7 Hb_000115_050 0.2097167137 - - -
8 Hb_000723_160 0.2137883369 transcription factor TF Family: TCP PREDICTED: transcription factor TCP11 [Jatropha curcas]
9 Hb_002609_060 0.2153749745 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
10 Hb_002233_120 0.2170141537 - - -
11 Hb_012423_050 0.2177672485 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
12 Hb_003702_080 0.2194042457 - - cysteine protease, putative [Ricinus communis]
13 Hb_005128_040 0.2200220699 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000340_320 0.220122018 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
15 Hb_003913_080 0.2213962341 - - rpl27A [Hemiselmis andersenii]
16 Hb_009838_040 0.2221181174 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
17 Hb_002014_160 0.2238528826 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor C-1 [Jatropha curcas]
18 Hb_075359_010 0.2242024132 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
19 Hb_001427_230 0.2242198608 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000161_150 0.2243544156 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002067_100 Hb_002067_100 Hb_003032_100 Hb_003032_100 Hb_002067_100--Hb_003032_100 Hb_000012_230 Hb_000012_230 Hb_002067_100--Hb_000012_230 Hb_004333_030 Hb_004333_030 Hb_002067_100--Hb_004333_030 Hb_000896_120 Hb_000896_120 Hb_002067_100--Hb_000896_120 Hb_088202_010 Hb_088202_010 Hb_002067_100--Hb_088202_010 Hb_000115_050 Hb_000115_050 Hb_002067_100--Hb_000115_050 Hb_005671_020 Hb_005671_020 Hb_003032_100--Hb_005671_020 Hb_000161_150 Hb_000161_150 Hb_003032_100--Hb_000161_150 Hb_003913_080 Hb_003913_080 Hb_003032_100--Hb_003913_080 Hb_000227_200 Hb_000227_200 Hb_003032_100--Hb_000227_200 Hb_000172_570 Hb_000172_570 Hb_003032_100--Hb_000172_570 Hb_004077_030 Hb_004077_030 Hb_000012_230--Hb_004077_030 Hb_012423_050 Hb_012423_050 Hb_000012_230--Hb_012423_050 Hb_001935_030 Hb_001935_030 Hb_000012_230--Hb_001935_030 Hb_001473_120 Hb_001473_120 Hb_000012_230--Hb_001473_120 Hb_001584_300 Hb_001584_300 Hb_000012_230--Hb_001584_300 Hb_009265_060 Hb_009265_060 Hb_000012_230--Hb_009265_060 Hb_030565_040 Hb_030565_040 Hb_004333_030--Hb_030565_040 Hb_001623_430 Hb_001623_430 Hb_004333_030--Hb_001623_430 Hb_000318_490 Hb_000318_490 Hb_004333_030--Hb_000318_490 Hb_004333_030--Hb_000896_120 Hb_187083_010 Hb_187083_010 Hb_004333_030--Hb_187083_010 Hb_000106_100 Hb_000106_100 Hb_004333_030--Hb_000106_100 Hb_183086_040 Hb_183086_040 Hb_000896_120--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000896_120--Hb_000922_100 Hb_000300_390 Hb_000300_390 Hb_000896_120--Hb_000300_390 Hb_000215_180 Hb_000215_180 Hb_000896_120--Hb_000215_180 Hb_001232_140 Hb_001232_140 Hb_000896_120--Hb_001232_140 Hb_005663_120 Hb_005663_120 Hb_000896_120--Hb_005663_120 Hb_007161_010 Hb_007161_010 Hb_088202_010--Hb_007161_010 Hb_000363_200 Hb_000363_200 Hb_088202_010--Hb_000363_200 Hb_005614_050 Hb_005614_050 Hb_088202_010--Hb_005614_050 Hb_088202_010--Hb_001935_030 Hb_006153_120 Hb_006153_120 Hb_088202_010--Hb_006153_120 Hb_002078_460 Hb_002078_460 Hb_088202_010--Hb_002078_460 Hb_000749_240 Hb_000749_240 Hb_000115_050--Hb_000749_240 Hb_017134_010 Hb_017134_010 Hb_000115_050--Hb_017134_010 Hb_000115_050--Hb_003913_080 Hb_002151_050 Hb_002151_050 Hb_000115_050--Hb_002151_050 Hb_108528_010 Hb_108528_010 Hb_000115_050--Hb_108528_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.101711 0.0433923 0 0.121656 0 0.136491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.355836 0.372792 0.480698 0.192464 0

CAGE analysis