Hb_002067_120

Information

Type -
Description -
Location Contig2067: 88888-95205
Sequence    

Annotation

kegg
ID cic:CICLE_v10020871mg
description hypothetical protein
nr
ID XP_011005248.1
description PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
swissprot
ID P46519
description Desiccation protectant protein Lea14 homolog OS=Glycine max PE=2 SV=1
trembl
ID V4TPB1
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020871mg PE=4 SV=1
Gene Ontology
ID GO:0009269
description late embryogenesis abundant group 2 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21294: 89033-94267 , PASA_asmbl_21295: 92629-92927 , PASA_asmbl_21297: 89135-89420
cDNA
(Sanger)
(ID:Location)		 028_F11.ab1: 90277-91031 , 037_F20.ab1: 89033-90896 , 046_J10.ab1: 89033-90882 , 049_I10.ab1: 89031-90803 , 051_P05.ab1: 89031-90854

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002067_120 0.0 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
2 Hb_012023_020 0.076351969 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
3 Hb_010565_010 0.0801836958 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
4 Hb_006951_020 0.0809333191 - - Rop3 [Hevea brasiliensis]
5 Hb_000107_200 0.0823760573 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
6 Hb_126295_010 0.0866782738 - - PREDICTED: protein SEH1 [Jatropha curcas]
7 Hb_000606_080 0.0897074817 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
8 Hb_005170_040 0.0957017851 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
9 Hb_004934_070 0.0981055949 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
10 Hb_187739_020 0.0994852427 - - PREDICTED: B2 protein [Jatropha curcas]
11 Hb_008643_040 0.1007173058 - - PREDICTED: jacalin-related lectin 3-like [Jatropha curcas]
12 Hb_001047_030 0.1009396564 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
13 Hb_000069_160 0.1020437917 - - -
14 Hb_000679_150 0.1050414588 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
15 Hb_000212_240 0.1079977472 - - short-chain dehydrogenase, putative [Ricinus communis]
16 Hb_144598_030 0.1086163127 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
17 Hb_002982_040 0.1088224935 - - mta/sah nucleosidase, putative [Ricinus communis]
18 Hb_003502_080 0.1090335629 - - vacuolar protein sorting, putative [Ricinus communis]
19 Hb_004881_020 0.1091686216 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
20 Hb_000160_220 0.109313976 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002067_120 Hb_002067_120 Hb_012023_020 Hb_012023_020 Hb_002067_120--Hb_012023_020 Hb_010565_010 Hb_010565_010 Hb_002067_120--Hb_010565_010 Hb_006951_020 Hb_006951_020 Hb_002067_120--Hb_006951_020 Hb_000107_200 Hb_000107_200 Hb_002067_120--Hb_000107_200 Hb_126295_010 Hb_126295_010 Hb_002067_120--Hb_126295_010 Hb_000606_080 Hb_000606_080 Hb_002067_120--Hb_000606_080 Hb_080313_010 Hb_080313_010 Hb_012023_020--Hb_080313_010 Hb_001140_350 Hb_001140_350 Hb_012023_020--Hb_001140_350 Hb_000645_120 Hb_000645_120 Hb_012023_020--Hb_000645_120 Hb_010931_040 Hb_010931_040 Hb_012023_020--Hb_010931_040 Hb_012023_020--Hb_126295_010 Hb_001386_140 Hb_001386_140 Hb_010565_010--Hb_001386_140 Hb_010565_010--Hb_000606_080 Hb_005023_030 Hb_005023_030 Hb_010565_010--Hb_005023_030 Hb_004934_070 Hb_004934_070 Hb_010565_010--Hb_004934_070 Hb_005714_130 Hb_005714_130 Hb_010565_010--Hb_005714_130 Hb_000322_100 Hb_000322_100 Hb_006951_020--Hb_000322_100 Hb_000755_030 Hb_000755_030 Hb_006951_020--Hb_000755_030 Hb_001047_030 Hb_001047_030 Hb_006951_020--Hb_001047_030 Hb_007477_080 Hb_007477_080 Hb_006951_020--Hb_007477_080 Hb_003502_080 Hb_003502_080 Hb_006951_020--Hb_003502_080 Hb_001018_130 Hb_001018_130 Hb_000107_200--Hb_001018_130 Hb_008120_010 Hb_008120_010 Hb_000107_200--Hb_008120_010 Hb_002445_120 Hb_002445_120 Hb_000107_200--Hb_002445_120 Hb_000606_090 Hb_000606_090 Hb_000107_200--Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000107_200--Hb_001135_060 Hb_019053_020 Hb_019053_020 Hb_126295_010--Hb_019053_020 Hb_003549_090 Hb_003549_090 Hb_126295_010--Hb_003549_090 Hb_001541_090 Hb_001541_090 Hb_126295_010--Hb_001541_090 Hb_000025_050 Hb_000025_050 Hb_126295_010--Hb_000025_050 Hb_041392_010 Hb_041392_010 Hb_000606_080--Hb_041392_010 Hb_000606_080--Hb_003502_080 Hb_000197_210 Hb_000197_210 Hb_000606_080--Hb_000197_210 Hb_000679_150 Hb_000679_150 Hb_000606_080--Hb_000679_150 Hb_000606_080--Hb_006951_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
418.681 294.592 220.762 520.759 407.241 940.21
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
367.677 245.323 316.143 249.344 155.884

CAGE analysis