Hb_002067_140

Information

Type -
Description -
Location Contig2067: 110699-112255
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21300: 110247-111959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002067_140 0.0 - - -
2 Hb_001776_170 0.1074393066 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001369_600 0.1119245537 - - kinase, putative [Ricinus communis]
4 Hb_012053_050 0.1461967974 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
5 Hb_001369_450 0.1462460565 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
6 Hb_001488_370 0.1600425112 - - Esterase PIR7B, putative [Ricinus communis]
7 Hb_000094_110 0.1705768252 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000979_250 0.1752982002 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003398_140 0.1770228489 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_001894_170 0.1808634742 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
11 Hb_002759_240 0.1825570982 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
12 Hb_000270_620 0.1835821374 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
13 Hb_007426_050 0.1870278716 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
14 Hb_000373_180 0.1872293668 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
15 Hb_001052_030 0.1897877127 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
16 Hb_148850_010 0.1913417218 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
17 Hb_001396_090 0.1932288991 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
18 Hb_001511_140 0.1939499073 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
19 Hb_012545_050 0.198392565 - - PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]
20 Hb_012053_040 0.1993978355 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002067_140 Hb_002067_140 Hb_001776_170 Hb_001776_170 Hb_002067_140--Hb_001776_170 Hb_001369_600 Hb_001369_600 Hb_002067_140--Hb_001369_600 Hb_012053_050 Hb_012053_050 Hb_002067_140--Hb_012053_050 Hb_001369_450 Hb_001369_450 Hb_002067_140--Hb_001369_450 Hb_001488_370 Hb_001488_370 Hb_002067_140--Hb_001488_370 Hb_000094_110 Hb_000094_110 Hb_002067_140--Hb_000094_110 Hb_001776_170--Hb_001369_600 Hb_001776_170--Hb_012053_050 Hb_001511_140 Hb_001511_140 Hb_001776_170--Hb_001511_140 Hb_002759_240 Hb_002759_240 Hb_001776_170--Hb_002759_240 Hb_000979_250 Hb_000979_250 Hb_001776_170--Hb_000979_250 Hb_001369_600--Hb_012053_050 Hb_001369_600--Hb_001488_370 Hb_007426_050 Hb_007426_050 Hb_001369_600--Hb_007426_050 Hb_000589_160 Hb_000589_160 Hb_001369_600--Hb_000589_160 Hb_012053_050--Hb_000589_160 Hb_000373_180 Hb_000373_180 Hb_012053_050--Hb_000373_180 Hb_012053_050--Hb_002759_240 Hb_012053_050--Hb_001488_370 Hb_012545_050 Hb_012545_050 Hb_001369_450--Hb_012545_050 Hb_001369_450--Hb_001776_170 Hb_001369_450--Hb_002759_240 Hb_001369_450--Hb_001511_140 Hb_001369_450--Hb_000979_250 Hb_001488_370--Hb_012545_050 Hb_000997_190 Hb_000997_190 Hb_001488_370--Hb_000997_190 Hb_001437_130 Hb_001437_130 Hb_001488_370--Hb_001437_130 Hb_001488_370--Hb_001776_170 Hb_001052_030 Hb_001052_030 Hb_000094_110--Hb_001052_030 Hb_003847_020 Hb_003847_020 Hb_000094_110--Hb_003847_020 Hb_000175_130 Hb_000175_130 Hb_000094_110--Hb_000175_130 Hb_146225_010 Hb_146225_010 Hb_000094_110--Hb_146225_010 Hb_001386_050 Hb_001386_050 Hb_000094_110--Hb_001386_050 Hb_002918_140 Hb_002918_140 Hb_000094_110--Hb_002918_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.4899 21.0654 8.55594 13.738 3.39384 6.00563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.8198 255.979 166.299 36.9744 1.25428

CAGE analysis