Hb_002067_150

Information

Type -
Description -
Location Contig2067: 114166-122140
Sequence    

Annotation

kegg
ID rcu:RCOM_0385680
description hypothetical protein
nr
ID XP_012081905.1
description PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
swissprot
ID Q9M1Y3
description Ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana GN=SKIP35 PE=1 SV=1
trembl
ID A0A067K075
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21301: 114157-122394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002067_150 0.0 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
2 Hb_005977_090 0.0819651396 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
3 Hb_007904_220 0.0824732253 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
4 Hb_000568_040 0.0828289024 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
5 Hb_000600_070 0.0845520395 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
6 Hb_005205_020 0.0850675746 - - PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
7 Hb_025012_010 0.0870411763 - - PREDICTED: importin-4 [Vitis vinifera]
8 Hb_028487_110 0.087307488 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
9 Hb_001040_160 0.0879872619 - - glutaredoxin, grx, putative [Ricinus communis]
10 Hb_001943_010 0.0882492062 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
11 Hb_000429_120 0.0885267973 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
12 Hb_000977_180 0.0893267413 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
13 Hb_000316_030 0.0896900957 - - zinc finger protein, putative [Ricinus communis]
14 Hb_002027_270 0.0905322151 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
15 Hb_009535_020 0.0947994355 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
16 Hb_000739_220 0.0960091673 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
17 Hb_000046_440 0.0971779752 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
18 Hb_003362_040 0.0974606499 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
19 Hb_000160_040 0.0975560147 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
20 Hb_000260_220 0.0988279419 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002067_150 Hb_002067_150 Hb_005977_090 Hb_005977_090 Hb_002067_150--Hb_005977_090 Hb_007904_220 Hb_007904_220 Hb_002067_150--Hb_007904_220 Hb_000568_040 Hb_000568_040 Hb_002067_150--Hb_000568_040 Hb_000600_070 Hb_000600_070 Hb_002067_150--Hb_000600_070 Hb_005205_020 Hb_005205_020 Hb_002067_150--Hb_005205_020 Hb_025012_010 Hb_025012_010 Hb_002067_150--Hb_025012_010 Hb_028487_110 Hb_028487_110 Hb_005977_090--Hb_028487_110 Hb_001638_250 Hb_001638_250 Hb_005977_090--Hb_001638_250 Hb_001866_110 Hb_001866_110 Hb_005977_090--Hb_001866_110 Hb_007586_030 Hb_007586_030 Hb_005977_090--Hb_007586_030 Hb_000803_300 Hb_000803_300 Hb_005977_090--Hb_000803_300 Hb_000522_090 Hb_000522_090 Hb_005977_090--Hb_000522_090 Hb_007904_220--Hb_005205_020 Hb_007904_220--Hb_025012_010 Hb_001221_040 Hb_001221_040 Hb_007904_220--Hb_001221_040 Hb_000436_040 Hb_000436_040 Hb_007904_220--Hb_000436_040 Hb_002028_170 Hb_002028_170 Hb_007904_220--Hb_002028_170 Hb_007317_190 Hb_007317_190 Hb_000568_040--Hb_007317_190 Hb_001040_160 Hb_001040_160 Hb_000568_040--Hb_001040_160 Hb_000017_340 Hb_000017_340 Hb_000568_040--Hb_000017_340 Hb_000370_030 Hb_000370_030 Hb_000568_040--Hb_000370_030 Hb_001307_140 Hb_001307_140 Hb_000568_040--Hb_001307_140 Hb_009535_020 Hb_009535_020 Hb_000600_070--Hb_009535_020 Hb_000743_040 Hb_000743_040 Hb_000600_070--Hb_000743_040 Hb_000347_130 Hb_000347_130 Hb_000600_070--Hb_000347_130 Hb_000567_050 Hb_000567_050 Hb_000600_070--Hb_000567_050 Hb_003428_070 Hb_003428_070 Hb_000600_070--Hb_003428_070 Hb_000023_190 Hb_000023_190 Hb_000600_070--Hb_000023_190 Hb_001943_010 Hb_001943_010 Hb_005205_020--Hb_001943_010 Hb_001322_210 Hb_001322_210 Hb_005205_020--Hb_001322_210 Hb_001771_130 Hb_001771_130 Hb_005205_020--Hb_001771_130 Hb_005205_020--Hb_025012_010 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_025012_010--Hb_004619_050 Hb_025012_010--Hb_000347_130 Hb_025012_010--Hb_003428_070 Hb_025012_010--Hb_001040_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.0754 50.0039 10.0901 29.947 96.1016 120.509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.6402 26.6441 57.3798 61.8843 30.4924

CAGE analysis