Hb_002067_160

Information

Type -
Description -
Location Contig2067: 138583-143531
Sequence    

Annotation

kegg
ID rcu:RCOM_0385650
description Protein MLO, putative
nr
ID XP_002533335.1
description Protein MLO, putative [Ricinus communis]
swissprot
ID O49621
description MLO-like protein 1 OS=Arabidopsis thaliana GN=MLO1 PE=1 SV=1
trembl
ID B9T516
description MLO-like protein (Fragment) OS=Ricinus communis GN=MLO PE=3 SV=1
Gene Ontology
ID GO:0016021
description mlo-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21304: 138589-143333
cDNA
(Sanger)
(ID:Location)		 040_G14.ab1: 138591-139964

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002067_160 0.0 - - Protein MLO, putative [Ricinus communis]
2 Hb_000085_340 0.063993735 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
3 Hb_005488_100 0.0744106374 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
4 Hb_004738_090 0.0763279656 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007178_010 0.0769771154 - - pseudo-hevein [Hevea brasiliensis]
6 Hb_026048_090 0.0809689965 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002232_180 0.0852528807 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
8 Hb_002391_110 0.0907175687 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
9 Hb_001476_100 0.0918540226 - - conserved hypothetical protein [Ricinus communis]
10 Hb_127979_010 0.1003791419 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
11 Hb_009510_030 0.1009081139 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
12 Hb_001017_090 0.1013197268 - - -
13 Hb_000057_060 0.1013881907 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
14 Hb_004126_010 0.1016465879 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
15 Hb_010931_100 0.1023145725 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
16 Hb_002506_010 0.1027225815 - - choline transporter-related family protein [Populus trichocarpa]
17 Hb_003404_030 0.104503536 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
18 Hb_002609_260 0.1048373984 - - CCCH-type zinc finger protein [Hevea brasiliensis]
19 Hb_000264_190 0.1054215181 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
20 Hb_002450_050 0.1059179701 - - PREDICTED: geraniol 8-hydroxylase-like [Solanum lycopersicum]

Gene co-expression network

sample Hb_002067_160 Hb_002067_160 Hb_000085_340 Hb_000085_340 Hb_002067_160--Hb_000085_340 Hb_005488_100 Hb_005488_100 Hb_002067_160--Hb_005488_100 Hb_004738_090 Hb_004738_090 Hb_002067_160--Hb_004738_090 Hb_007178_010 Hb_007178_010 Hb_002067_160--Hb_007178_010 Hb_026048_090 Hb_026048_090 Hb_002067_160--Hb_026048_090 Hb_002232_180 Hb_002232_180 Hb_002067_160--Hb_002232_180 Hb_005754_020 Hb_005754_020 Hb_000085_340--Hb_005754_020 Hb_002391_110 Hb_002391_110 Hb_000085_340--Hb_002391_110 Hb_002377_040 Hb_002377_040 Hb_000085_340--Hb_002377_040 Hb_000085_340--Hb_026048_090 Hb_000176_140 Hb_000176_140 Hb_000085_340--Hb_000176_140 Hb_010931_100 Hb_010931_100 Hb_005488_100--Hb_010931_100 Hb_002609_260 Hb_002609_260 Hb_005488_100--Hb_002609_260 Hb_005488_100--Hb_007178_010 Hb_000264_190 Hb_000264_190 Hb_005488_100--Hb_000264_190 Hb_005488_100--Hb_002232_180 Hb_004738_090--Hb_000085_340 Hb_004738_090--Hb_000264_190 Hb_004738_090--Hb_002232_180 Hb_004738_090--Hb_010931_100 Hb_178968_150 Hb_178968_150 Hb_004738_090--Hb_178968_150 Hb_007178_010--Hb_002232_180 Hb_007810_040 Hb_007810_040 Hb_007178_010--Hb_007810_040 Hb_003906_110 Hb_003906_110 Hb_007178_010--Hb_003906_110 Hb_007178_010--Hb_010931_100 Hb_009510_030 Hb_009510_030 Hb_026048_090--Hb_009510_030 Hb_127979_010 Hb_127979_010 Hb_026048_090--Hb_127979_010 Hb_000771_140 Hb_000771_140 Hb_026048_090--Hb_000771_140 Hb_000057_060 Hb_000057_060 Hb_026048_090--Hb_000057_060 Hb_001433_170 Hb_001433_170 Hb_026048_090--Hb_001433_170 Hb_004126_010 Hb_004126_010 Hb_026048_090--Hb_004126_010 Hb_002232_180--Hb_007810_040 Hb_002232_180--Hb_002609_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
575.075 16.462 20.6762 50.7649 397.67 474.548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
285.527 223.626 300.763 58.6197 26.4442

CAGE analysis