Hb_002071_030

Information

Type -
Description -
Location Contig2071: 82089-83926
Sequence    

Annotation

kegg
ID tcc:TCM_030382
description Uridylyltransferase-related
nr
ID XP_012449277.1
description PREDICTED: ACT domain-containing protein ACR11-like isoform X1 [Gossypium raimondii]
swissprot
ID Q0J709
description ACT domain-containing protein DS12, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=3 SV=2
trembl
ID A0A0D2UEY4
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G188200 PE=4 SV=1
Gene Ontology
ID GO:0009535
description amino acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002071_030 0.0 - - PREDICTED: ACT domain-containing protein ACR11-like isoform X1 [Gossypium raimondii]
2 Hb_134949_010 0.0905107883 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
3 Hb_000174_080 0.097469615 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
4 Hb_001268_170 0.1153470938 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
5 Hb_003602_100 0.1183299492 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
6 Hb_001195_290 0.1240640749 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
7 Hb_002249_090 0.1273967488 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
8 Hb_007803_040 0.1294405403 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
9 Hb_000898_090 0.1352146807 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105633600 isoform X1 [Jatropha curcas]
10 Hb_058620_080 0.1372671591 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
11 Hb_002477_020 0.1390700571 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
12 Hb_000029_330 0.1393382524 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
13 Hb_137216_010 0.1395350573 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
14 Hb_001517_010 0.1452497825 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002307_190 0.1457937539 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
16 Hb_000035_340 0.1478438687 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009296_030 0.1481972361 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
18 Hb_000317_180 0.1496816949 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
19 Hb_000393_040 0.1502622838 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
20 Hb_002485_050 0.1508097475 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002071_030 Hb_002071_030 Hb_134949_010 Hb_134949_010 Hb_002071_030--Hb_134949_010 Hb_000174_080 Hb_000174_080 Hb_002071_030--Hb_000174_080 Hb_001268_170 Hb_001268_170 Hb_002071_030--Hb_001268_170 Hb_003602_100 Hb_003602_100 Hb_002071_030--Hb_003602_100 Hb_001195_290 Hb_001195_290 Hb_002071_030--Hb_001195_290 Hb_002249_090 Hb_002249_090 Hb_002071_030--Hb_002249_090 Hb_001517_010 Hb_001517_010 Hb_134949_010--Hb_001517_010 Hb_134949_010--Hb_001195_290 Hb_000029_330 Hb_000029_330 Hb_134949_010--Hb_000029_330 Hb_000317_180 Hb_000317_180 Hb_134949_010--Hb_000317_180 Hb_009296_030 Hb_009296_030 Hb_134949_010--Hb_009296_030 Hb_000174_080--Hb_002249_090 Hb_137216_010 Hb_137216_010 Hb_000174_080--Hb_137216_010 Hb_000174_080--Hb_003602_100 Hb_007803_040 Hb_007803_040 Hb_000174_080--Hb_007803_040 Hb_000009_510 Hb_000009_510 Hb_000174_080--Hb_000009_510 Hb_011282_040 Hb_011282_040 Hb_001268_170--Hb_011282_040 Hb_000390_160 Hb_000390_160 Hb_001268_170--Hb_000390_160 Hb_001268_170--Hb_001195_290 Hb_001141_340 Hb_001141_340 Hb_001268_170--Hb_001141_340 Hb_005210_010 Hb_005210_010 Hb_001268_170--Hb_005210_010 Hb_003602_100--Hb_002249_090 Hb_003602_100--Hb_001195_290 Hb_003120_020 Hb_003120_020 Hb_003602_100--Hb_003120_020 Hb_010326_020 Hb_010326_020 Hb_003602_100--Hb_010326_020 Hb_000049_100 Hb_000049_100 Hb_003602_100--Hb_000049_100 Hb_003602_100--Hb_007803_040 Hb_006472_040 Hb_006472_040 Hb_001195_290--Hb_006472_040 Hb_001195_290--Hb_001517_010 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_001195_290--Hb_005210_010 Hb_002609_140 Hb_002609_140 Hb_002249_090--Hb_002609_140 Hb_000544_070 Hb_000544_070 Hb_002249_090--Hb_000544_070 Hb_000648_070 Hb_000648_070 Hb_002249_090--Hb_000648_070 Hb_107647_010 Hb_107647_010 Hb_002249_090--Hb_107647_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.45167 2.39726 132.428 42.9362 2.71881 4.82944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3603 5.28271 6.49193 3.57821 239.894

CAGE analysis