Hb_002071_050

Information

Type -
Description -
Location Contig2071: 104671-105729
Sequence    

Annotation

kegg
ID pop:POPTR_0008s01030g
description POPTRDRAFT_563479; MAP KINASE KINASE 4 family protein
nr
ID XP_012084329.1
description PREDICTED: mitogen-activated protein kinase kinase 5-like [Jatropha curcas]
swissprot
ID Q8RXG3
description Mitogen-activated protein kinase kinase 5 OS=Arabidopsis thaliana GN=MKK5 PE=1 SV=2
trembl
ID A0A067K649
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19828 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase 5-like isoform x4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21351: 104249-106327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002071_050 0.0 - - PREDICTED: mitogen-activated protein kinase kinase 5-like [Jatropha curcas]
2 Hb_000252_210 0.0714052399 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
3 Hb_001405_160 0.0973491657 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas]
4 Hb_009028_010 0.097478713 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
5 Hb_001856_220 0.0996149871 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005015_080 0.1013792559 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
7 Hb_007850_090 0.1027353929 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
8 Hb_006198_020 0.1027731809 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
9 Hb_127311_010 0.1065644329 - - hypothetical protein JCGZ_07497 [Jatropha curcas]
10 Hb_000487_380 0.1069340865 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
11 Hb_010661_010 0.1095120682 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
12 Hb_008937_010 0.1115052158 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
13 Hb_000258_370 0.1121311785 - - hypothetical protein [Ricinus communis]
14 Hb_000134_340 0.1147266036 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
15 Hb_004785_030 0.1150179547 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
16 Hb_001674_030 0.1158237404 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
17 Hb_005188_040 0.1171108237 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
18 Hb_001545_150 0.1175512916 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
19 Hb_000205_240 0.1187075137 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_000402_230 0.1198566881 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002071_050 Hb_002071_050 Hb_000252_210 Hb_000252_210 Hb_002071_050--Hb_000252_210 Hb_001405_160 Hb_001405_160 Hb_002071_050--Hb_001405_160 Hb_009028_010 Hb_009028_010 Hb_002071_050--Hb_009028_010 Hb_001856_220 Hb_001856_220 Hb_002071_050--Hb_001856_220 Hb_005015_080 Hb_005015_080 Hb_002071_050--Hb_005015_080 Hb_007850_090 Hb_007850_090 Hb_002071_050--Hb_007850_090 Hb_010661_010 Hb_010661_010 Hb_000252_210--Hb_010661_010 Hb_127311_010 Hb_127311_010 Hb_000252_210--Hb_127311_010 Hb_000460_060 Hb_000460_060 Hb_000252_210--Hb_000460_060 Hb_000252_210--Hb_001856_220 Hb_000252_210--Hb_001405_160 Hb_001473_110 Hb_001473_110 Hb_001405_160--Hb_001473_110 Hb_000347_390 Hb_000347_390 Hb_001405_160--Hb_000347_390 Hb_000836_380 Hb_000836_380 Hb_001405_160--Hb_000836_380 Hb_000347_400 Hb_000347_400 Hb_001405_160--Hb_000347_400 Hb_000017_220 Hb_000017_220 Hb_001405_160--Hb_000017_220 Hb_002307_270 Hb_002307_270 Hb_001405_160--Hb_002307_270 Hb_144744_010 Hb_144744_010 Hb_009028_010--Hb_144744_010 Hb_005188_040 Hb_005188_040 Hb_009028_010--Hb_005188_040 Hb_001541_250 Hb_001541_250 Hb_009028_010--Hb_001541_250 Hb_001935_140 Hb_001935_140 Hb_009028_010--Hb_001935_140 Hb_004785_030 Hb_004785_030 Hb_009028_010--Hb_004785_030 Hb_007054_040 Hb_007054_040 Hb_009028_010--Hb_007054_040 Hb_008937_010 Hb_008937_010 Hb_001856_220--Hb_008937_010 Hb_003181_040 Hb_003181_040 Hb_001856_220--Hb_003181_040 Hb_003918_030 Hb_003918_030 Hb_001856_220--Hb_003918_030 Hb_010407_060 Hb_010407_060 Hb_001856_220--Hb_010407_060 Hb_001545_150 Hb_001545_150 Hb_001856_220--Hb_001545_150 Hb_009545_090 Hb_009545_090 Hb_005015_080--Hb_009545_090 Hb_003398_080 Hb_003398_080 Hb_005015_080--Hb_003398_080 Hb_006198_020 Hb_006198_020 Hb_005015_080--Hb_006198_020 Hb_003175_030 Hb_003175_030 Hb_005015_080--Hb_003175_030 Hb_000815_240 Hb_000815_240 Hb_005015_080--Hb_000815_240 Hb_021443_090 Hb_021443_090 Hb_005015_080--Hb_021443_090 Hb_001674_030 Hb_001674_030 Hb_007850_090--Hb_001674_030 Hb_003544_110 Hb_003544_110 Hb_007850_090--Hb_003544_110 Hb_000525_010 Hb_000525_010 Hb_007850_090--Hb_000525_010 Hb_000072_120 Hb_000072_120 Hb_007850_090--Hb_000072_120 Hb_003078_020 Hb_003078_020 Hb_007850_090--Hb_003078_020 Hb_009627_030 Hb_009627_030 Hb_007850_090--Hb_009627_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.2817 104.752 23.8209 64.3087 28.7201 34.7022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.8736 25.9169 29.906 22.4872 32.9445

CAGE analysis