Hb_002071_070

Information

Type transcription factor
Description TF Family: RB
Location Contig2071: 114027-123559
Sequence    

Annotation

kegg
ID rcu:RCOM_1264670
description hypothetical protein
nr
ID XP_002529988.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9SVG9
description Retinoblastoma-related protein OS=Ricinus communis GN=RBR PE=2 SV=1
trembl
ID A0A067L458
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03096 PE=4 SV=1
Gene Ontology
ID GO:0005634
description retinoblastoma-related protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21353: 113946-118973 , PASA_asmbl_21355: 119037-123548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002071_070 0.0 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
2 Hb_000856_040 0.0580925469 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
3 Hb_002042_050 0.0584942107 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
4 Hb_003058_260 0.0595897031 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
5 Hb_002890_130 0.0608789443 - - tip120, putative [Ricinus communis]
6 Hb_002830_010 0.0608879694 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
7 Hb_012632_010 0.0617122051 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
8 Hb_000773_040 0.062571646 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
9 Hb_001817_170 0.0627296014 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
10 Hb_033312_040 0.0639470359 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
11 Hb_002989_020 0.0645954814 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
12 Hb_001481_060 0.0648265135 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
13 Hb_002411_110 0.0663904074 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
14 Hb_003758_010 0.0669150916 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
15 Hb_000046_500 0.0670089626 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
16 Hb_000778_010 0.0676416794 - - hypothetical protein [Bacillus subtilis]
17 Hb_000460_080 0.0678050072 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
18 Hb_105105_010 0.068991824 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
19 Hb_020178_040 0.0700329333 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004109_320 0.0700501521 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]

Gene co-expression network

sample Hb_002071_070 Hb_002071_070 Hb_000856_040 Hb_000856_040 Hb_002071_070--Hb_000856_040 Hb_002042_050 Hb_002042_050 Hb_002071_070--Hb_002042_050 Hb_003058_260 Hb_003058_260 Hb_002071_070--Hb_003058_260 Hb_002890_130 Hb_002890_130 Hb_002071_070--Hb_002890_130 Hb_002830_010 Hb_002830_010 Hb_002071_070--Hb_002830_010 Hb_012632_010 Hb_012632_010 Hb_002071_070--Hb_012632_010 Hb_001300_010 Hb_001300_010 Hb_000856_040--Hb_001300_010 Hb_000856_040--Hb_003058_260 Hb_000856_040--Hb_012632_010 Hb_105105_010 Hb_105105_010 Hb_000856_040--Hb_105105_010 Hb_004994_240 Hb_004994_240 Hb_000856_040--Hb_004994_240 Hb_002272_030 Hb_002272_030 Hb_002042_050--Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_002042_050--Hb_020178_040 Hb_000243_260 Hb_000243_260 Hb_002042_050--Hb_000243_260 Hb_006100_020 Hb_006100_020 Hb_002042_050--Hb_006100_020 Hb_000567_230 Hb_000567_230 Hb_002042_050--Hb_000567_230 Hb_001817_170 Hb_001817_170 Hb_002042_050--Hb_001817_170 Hb_003058_260--Hb_012632_010 Hb_004787_050 Hb_004787_050 Hb_003058_260--Hb_004787_050 Hb_000313_120 Hb_000313_120 Hb_003058_260--Hb_000313_120 Hb_001998_240 Hb_001998_240 Hb_003058_260--Hb_001998_240 Hb_011819_020 Hb_011819_020 Hb_002890_130--Hb_011819_020 Hb_002411_110 Hb_002411_110 Hb_002890_130--Hb_002411_110 Hb_000317_100 Hb_000317_100 Hb_002890_130--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_002890_130--Hb_005215_010 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_000261_480 Hb_000261_480 Hb_002890_130--Hb_000261_480 Hb_005582_040 Hb_005582_040 Hb_002830_010--Hb_005582_040 Hb_004030_080 Hb_004030_080 Hb_002830_010--Hb_004030_080 Hb_010515_020 Hb_010515_020 Hb_002830_010--Hb_010515_020 Hb_010068_080 Hb_010068_080 Hb_002830_010--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_002830_010--Hb_001304_110 Hb_012632_010--Hb_002890_130 Hb_012632_010--Hb_002830_010 Hb_004374_110 Hb_004374_110 Hb_012632_010--Hb_004374_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.53908 11.3828 12.0018 12.7449 8.46568 7.70471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.91759 7.86092 10.6785 11.8439 11.3837

CAGE analysis