Hb_002072_020

Information

Type -
Description -
Location Contig2072: 57384-59222
Sequence    

Annotation

kegg
ID tcc:TCM_034743
description ARM-repeat/Tetratricopeptide repeat-like protein
nr
ID KDP41650.1
description hypothetical protein JCGZ_16057 [Jatropha curcas]
swissprot
ID Q99614
description Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1
trembl
ID A0A067LAX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16057 PE=4 SV=1
Gene Ontology
ID GO:0005515
description arm-repeat tetratricopeptide repeat-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002072_020 0.0 - - hypothetical protein JCGZ_16057 [Jatropha curcas]
2 Hb_000003_510 0.1266076792 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
3 Hb_000976_440 0.1386562189 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_048476_010 0.1500523275 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Citrus sinensis]
5 Hb_032050_050 0.1548306701 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
6 Hb_000077_330 0.1561860981 - - PREDICTED: bifunctional epoxide hydrolase 2-like [Jatropha curcas]
7 Hb_009823_010 0.1597996036 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
8 Hb_000958_030 0.1653995304 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
9 Hb_010175_060 0.1716250023 - - conserved hypothetical protein [Ricinus communis]
10 Hb_111582_010 0.1751038307 - - hypothetical protein POPTR_0303s002201g, partial [Populus trichocarpa]
11 Hb_002150_010 0.1796247675 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
12 Hb_006588_030 0.1806885799 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
13 Hb_001959_030 0.1811354224 - - conserved hypothetical protein [Ricinus communis]
14 Hb_142332_010 0.1816793922 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
15 Hb_001221_480 0.1823699881 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_080147_060 0.1848314158 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
17 Hb_001678_030 0.1865021539 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
18 Hb_000762_070 0.1874128799 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
19 Hb_000556_140 0.1878618742 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
20 Hb_000580_070 0.1903767472 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]

Gene co-expression network

sample Hb_002072_020 Hb_002072_020 Hb_000003_510 Hb_000003_510 Hb_002072_020--Hb_000003_510 Hb_000976_440 Hb_000976_440 Hb_002072_020--Hb_000976_440 Hb_048476_010 Hb_048476_010 Hb_002072_020--Hb_048476_010 Hb_032050_050 Hb_032050_050 Hb_002072_020--Hb_032050_050 Hb_000077_330 Hb_000077_330 Hb_002072_020--Hb_000077_330 Hb_009823_010 Hb_009823_010 Hb_002072_020--Hb_009823_010 Hb_001963_020 Hb_001963_020 Hb_000003_510--Hb_001963_020 Hb_001369_620 Hb_001369_620 Hb_000003_510--Hb_001369_620 Hb_000276_030 Hb_000276_030 Hb_000003_510--Hb_000276_030 Hb_001470_040 Hb_001470_040 Hb_000003_510--Hb_001470_040 Hb_010174_170 Hb_010174_170 Hb_000003_510--Hb_010174_170 Hb_000976_440--Hb_009823_010 Hb_001408_050 Hb_001408_050 Hb_000976_440--Hb_001408_050 Hb_000762_070 Hb_000762_070 Hb_000976_440--Hb_000762_070 Hb_003576_050 Hb_003576_050 Hb_000976_440--Hb_003576_050 Hb_001678_030 Hb_001678_030 Hb_000976_440--Hb_001678_030 Hb_027634_010 Hb_027634_010 Hb_048476_010--Hb_027634_010 Hb_001921_020 Hb_001921_020 Hb_048476_010--Hb_001921_020 Hb_001640_020 Hb_001640_020 Hb_048476_010--Hb_001640_020 Hb_001959_030 Hb_001959_030 Hb_048476_010--Hb_001959_030 Hb_004122_030 Hb_004122_030 Hb_048476_010--Hb_004122_030 Hb_000984_080 Hb_000984_080 Hb_032050_050--Hb_000984_080 Hb_002110_270 Hb_002110_270 Hb_032050_050--Hb_002110_270 Hb_002150_010 Hb_002150_010 Hb_032050_050--Hb_002150_010 Hb_002900_070 Hb_002900_070 Hb_032050_050--Hb_002900_070 Hb_006006_070 Hb_006006_070 Hb_032050_050--Hb_006006_070 Hb_076895_020 Hb_076895_020 Hb_032050_050--Hb_076895_020 Hb_018591_050 Hb_018591_050 Hb_000077_330--Hb_018591_050 Hb_000077_330--Hb_032050_050 Hb_008692_010 Hb_008692_010 Hb_000077_330--Hb_008692_010 Hb_001649_040 Hb_001649_040 Hb_000077_330--Hb_001649_040 Hb_031042_030 Hb_031042_030 Hb_000077_330--Hb_031042_030 Hb_012553_020 Hb_012553_020 Hb_000077_330--Hb_012553_020 Hb_009823_010--Hb_003576_050 Hb_009823_010--Hb_001408_050 Hb_000181_160 Hb_000181_160 Hb_009823_010--Hb_000181_160 Hb_000638_090 Hb_000638_090 Hb_009823_010--Hb_000638_090 Hb_000098_310 Hb_000098_310 Hb_009823_010--Hb_000098_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0405683 0.252212 0.0656166 0.188089 0.0102026 0.0582974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.729789 0.0410994

CAGE analysis