Hb_002072_040

Information

Type -
Description -
Location Contig2072: 73131-75983
Sequence    

Annotation

kegg
ID rcu:RCOM_1588200
description hypothetical protein
nr
ID XP_012068260.1
description PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16058 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21363: 73033-75373
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002072_040 0.0 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
2 Hb_002025_380 0.1170100804 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
3 Hb_009767_050 0.1173678327 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
4 Hb_005168_020 0.1239164639 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
5 Hb_006277_030 0.1307178667 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003189_010 0.1350789314 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
7 Hb_005731_070 0.140531653 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005663_090 0.1425429123 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
9 Hb_005144_080 0.1465406873 - - Serine carboxypeptidase, putative [Ricinus communis]
10 Hb_002301_110 0.1470030882 - - PREDICTED: protein E6-like [Populus euphratica]
11 Hb_000668_050 0.1481602754 - - phosphoglycerate mutase, putative [Ricinus communis]
12 Hb_004545_070 0.1515492388 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
13 Hb_006501_100 0.1518135641 - - malic enzyme, putative [Ricinus communis]
14 Hb_002818_170 0.1531754813 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
15 Hb_001040_200 0.1535507008 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
16 Hb_006711_040 0.1538215124 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
17 Hb_001252_070 0.1573745631 - - hypothetical protein JCGZ_01385 [Jatropha curcas]
18 Hb_001832_140 0.1596557166 - - endomembrane protein 70 family protein [Medicago truncatula]
19 Hb_000000_200 0.1613676416 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
20 Hb_164926_040 0.1613698572 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]

Gene co-expression network

sample Hb_002072_040 Hb_002072_040 Hb_002025_380 Hb_002025_380 Hb_002072_040--Hb_002025_380 Hb_009767_050 Hb_009767_050 Hb_002072_040--Hb_009767_050 Hb_005168_020 Hb_005168_020 Hb_002072_040--Hb_005168_020 Hb_006277_030 Hb_006277_030 Hb_002072_040--Hb_006277_030 Hb_003189_010 Hb_003189_010 Hb_002072_040--Hb_003189_010 Hb_005731_070 Hb_005731_070 Hb_002072_040--Hb_005731_070 Hb_002025_380--Hb_006277_030 Hb_002025_380--Hb_003189_010 Hb_002818_170 Hb_002818_170 Hb_002025_380--Hb_002818_170 Hb_002097_180 Hb_002097_180 Hb_002025_380--Hb_002097_180 Hb_005144_080 Hb_005144_080 Hb_002025_380--Hb_005144_080 Hb_006501_100 Hb_006501_100 Hb_002025_380--Hb_006501_100 Hb_009767_050--Hb_002025_380 Hb_009767_050--Hb_002818_170 Hb_009767_050--Hb_002097_180 Hb_009767_050--Hb_003189_010 Hb_009767_050--Hb_006277_030 Hb_005663_090 Hb_005663_090 Hb_005168_020--Hb_005663_090 Hb_000951_090 Hb_000951_090 Hb_005168_020--Hb_000951_090 Hb_000337_030 Hb_000337_030 Hb_005168_020--Hb_000337_030 Hb_000714_060 Hb_000714_060 Hb_005168_020--Hb_000714_060 Hb_000152_120 Hb_000152_120 Hb_005168_020--Hb_000152_120 Hb_006277_030--Hb_002818_170 Hb_006277_030--Hb_003189_010 Hb_006277_030--Hb_006501_100 Hb_004282_010 Hb_004282_010 Hb_006277_030--Hb_004282_010 Hb_006277_030--Hb_005144_080 Hb_003189_010--Hb_002818_170 Hb_003189_010--Hb_002097_180 Hb_003189_010--Hb_005731_070 Hb_000668_050 Hb_000668_050 Hb_003189_010--Hb_000668_050 Hb_000011_370 Hb_000011_370 Hb_005731_070--Hb_000011_370 Hb_007386_030 Hb_007386_030 Hb_005731_070--Hb_007386_030 Hb_007017_100 Hb_007017_100 Hb_005731_070--Hb_007017_100 Hb_005731_070--Hb_000714_060 Hb_000014_080 Hb_000014_080 Hb_005731_070--Hb_000014_080 Hb_000594_160 Hb_000594_160 Hb_005731_070--Hb_000594_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0527941 0.343823 3.70288 4.69946 0.0494269 0.0102235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0240064 0.0188885 0.286106 5.46617 1.63389

CAGE analysis