Hb_002073_090

Information

Type -
Description -
Location Contig2073: 55011-55484
Sequence    

Annotation

kegg
ID cit:102619752
description copper transporter 1-like
nr
ID XP_012066930.1
description PREDICTED: copper transporter 6-like [Jatropha curcas]
swissprot
ID Q8GWP3
description Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1
trembl
ID A0A067LDM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02904 PE=4 SV=1
Gene Ontology
ID GO:0016021
description copper transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_090 0.0 - - PREDICTED: copper transporter 6-like [Jatropha curcas]
2 Hb_006717_010 0.1654406592 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
3 Hb_000230_470 0.1692155238 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
4 Hb_000170_160 0.1693043822 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
5 Hb_003106_240 0.1738050801 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
6 Hb_000753_120 0.1757944288 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
7 Hb_011310_150 0.178536343 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
8 Hb_000307_010 0.1789541866 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
9 Hb_000567_240 0.1795877666 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A-like [Jatropha curcas]
10 Hb_000589_420 0.18239767 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
11 Hb_000923_100 0.1852775868 - - chloride channel clc, putative [Ricinus communis]
12 Hb_002759_100 0.1870560795 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
13 Hb_002188_030 0.1871643273 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_003750_130 0.1880954331 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001621_050 0.189676978 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
16 Hb_004678_010 0.1898337429 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
17 Hb_004013_020 0.190043024 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
18 Hb_000753_140 0.1901548333 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
19 Hb_003912_080 0.1923047924 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
20 Hb_001541_160 0.1928302284 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]

Gene co-expression network

sample Hb_002073_090 Hb_002073_090 Hb_006717_010 Hb_006717_010 Hb_002073_090--Hb_006717_010 Hb_000230_470 Hb_000230_470 Hb_002073_090--Hb_000230_470 Hb_000170_160 Hb_000170_160 Hb_002073_090--Hb_000170_160 Hb_003106_240 Hb_003106_240 Hb_002073_090--Hb_003106_240 Hb_000753_120 Hb_000753_120 Hb_002073_090--Hb_000753_120 Hb_011310_150 Hb_011310_150 Hb_002073_090--Hb_011310_150 Hb_001195_250 Hb_001195_250 Hb_006717_010--Hb_001195_250 Hb_000567_240 Hb_000567_240 Hb_006717_010--Hb_000567_240 Hb_000103_410 Hb_000103_410 Hb_006717_010--Hb_000103_410 Hb_002006_060 Hb_002006_060 Hb_006717_010--Hb_002006_060 Hb_000589_420 Hb_000589_420 Hb_006717_010--Hb_000589_420 Hb_001948_090 Hb_001948_090 Hb_006717_010--Hb_001948_090 Hb_005408_100 Hb_005408_100 Hb_000230_470--Hb_005408_100 Hb_002909_100 Hb_002909_100 Hb_000230_470--Hb_002909_100 Hb_000230_470--Hb_000753_120 Hb_003912_080 Hb_003912_080 Hb_000230_470--Hb_003912_080 Hb_000320_270 Hb_000320_270 Hb_000230_470--Hb_000320_270 Hb_002686_210 Hb_002686_210 Hb_000230_470--Hb_002686_210 Hb_013405_180 Hb_013405_180 Hb_000170_160--Hb_013405_180 Hb_003750_130 Hb_003750_130 Hb_000170_160--Hb_003750_130 Hb_000008_280 Hb_000008_280 Hb_000170_160--Hb_000008_280 Hb_001998_210 Hb_001998_210 Hb_000170_160--Hb_001998_210 Hb_021079_020 Hb_021079_020 Hb_000170_160--Hb_021079_020 Hb_000673_010 Hb_000673_010 Hb_000170_160--Hb_000673_010 Hb_011457_080 Hb_011457_080 Hb_003106_240--Hb_011457_080 Hb_004218_080 Hb_004218_080 Hb_003106_240--Hb_004218_080 Hb_010180_050 Hb_010180_050 Hb_003106_240--Hb_010180_050 Hb_027402_100 Hb_027402_100 Hb_003106_240--Hb_027402_100 Hb_000035_060 Hb_000035_060 Hb_003106_240--Hb_000035_060 Hb_007193_030 Hb_007193_030 Hb_003106_240--Hb_007193_030 Hb_004013_020 Hb_004013_020 Hb_000753_120--Hb_004013_020 Hb_000753_120--Hb_002909_100 Hb_000753_120--Hb_005408_100 Hb_031089_050 Hb_031089_050 Hb_000753_120--Hb_031089_050 Hb_000753_120--Hb_001948_090 Hb_166876_010 Hb_166876_010 Hb_011310_150--Hb_166876_010 Hb_002774_200 Hb_002774_200 Hb_011310_150--Hb_002774_200 Hb_001160_100 Hb_001160_100 Hb_011310_150--Hb_001160_100 Hb_002259_170 Hb_002259_170 Hb_011310_150--Hb_002259_170 Hb_001269_370 Hb_001269_370 Hb_011310_150--Hb_001269_370 Hb_000506_110 Hb_000506_110 Hb_011310_150--Hb_000506_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.3518 129.282 61.1865 65.2468 3.42576 14.2262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3796 9.68205 7.14204 7.90082 117.041

CAGE analysis