Hb_002073_130

Information

Type -
Description -
Location Contig2073: 78491-86963
Sequence    

Annotation

kegg
ID vvi:100246830
description uncharacterized LOC100246830
nr
ID XP_002281694.2
description PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
swissprot
ID Q9ZW24
description Glutathione S-transferase U7 OS=Arabidopsis thaliana GN=GSTU7 PE=2 SV=1
trembl
ID A0A0D3HFW0
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID GO:0004462
description glutathione s-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21375: 78496-79465 , PASA_asmbl_21376: 80941-81293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_130 0.0 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
2 Hb_132880_010 0.0483729484 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
3 Hb_000809_010 0.0767430496 - - hypothetical protein JCGZ_12342 [Jatropha curcas]
4 Hb_001593_040 0.0800446104 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_064445_020 0.0801738194 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
6 Hb_010883_160 0.0824186772 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
7 Hb_003151_020 0.0828069477 - - Ankyrin repeat family protein, putative [Theobroma cacao]
8 Hb_000076_240 0.0829900834 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
9 Hb_008453_050 0.0834086522 - - PREDICTED: peroxidase 64 [Jatropha curcas]
10 Hb_002326_010 0.0835173949 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
11 Hb_001472_150 0.0859364142 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
12 Hb_154038_010 0.0867685142 - - cytochrome P450, putative [Ricinus communis]
13 Hb_006483_040 0.0887190685 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
14 Hb_000654_020 0.0889886699 - - hypothetical protein CICLE_v10006262mg [Citrus clementina]
15 Hb_144550_010 0.0896004875 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
16 Hb_000077_040 0.0916695084 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
17 Hb_003549_100 0.0922030023 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
18 Hb_095744_010 0.0924259619 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
19 Hb_000224_190 0.0927491338 - - zinc finger protein, putative [Ricinus communis]
20 Hb_104014_020 0.0934813991 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002073_130 Hb_002073_130 Hb_132880_010 Hb_132880_010 Hb_002073_130--Hb_132880_010 Hb_000809_010 Hb_000809_010 Hb_002073_130--Hb_000809_010 Hb_001593_040 Hb_001593_040 Hb_002073_130--Hb_001593_040 Hb_064445_020 Hb_064445_020 Hb_002073_130--Hb_064445_020 Hb_010883_160 Hb_010883_160 Hb_002073_130--Hb_010883_160 Hb_003151_020 Hb_003151_020 Hb_002073_130--Hb_003151_020 Hb_003549_100 Hb_003549_100 Hb_132880_010--Hb_003549_100 Hb_095744_010 Hb_095744_010 Hb_132880_010--Hb_095744_010 Hb_144550_010 Hb_144550_010 Hb_132880_010--Hb_144550_010 Hb_002326_010 Hb_002326_010 Hb_132880_010--Hb_002326_010 Hb_132880_010--Hb_001593_040 Hb_008441_010 Hb_008441_010 Hb_000809_010--Hb_008441_010 Hb_000654_020 Hb_000654_020 Hb_000809_010--Hb_000654_020 Hb_000809_010--Hb_010883_160 Hb_000809_010--Hb_132880_010 Hb_000076_240 Hb_000076_240 Hb_000809_010--Hb_000076_240 Hb_001593_040--Hb_064445_020 Hb_001593_040--Hb_002326_010 Hb_008453_050 Hb_008453_050 Hb_001593_040--Hb_008453_050 Hb_000077_040 Hb_000077_040 Hb_001593_040--Hb_000077_040 Hb_154038_010 Hb_154038_010 Hb_001593_040--Hb_154038_010 Hb_104014_020 Hb_104014_020 Hb_001593_040--Hb_104014_020 Hb_064445_020--Hb_002326_010 Hb_064445_020--Hb_154038_010 Hb_064445_020--Hb_008453_050 Hb_006483_040 Hb_006483_040 Hb_064445_020--Hb_006483_040 Hb_000224_190 Hb_000224_190 Hb_064445_020--Hb_000224_190 Hb_010883_160--Hb_000654_020 Hb_001397_020 Hb_001397_020 Hb_010883_160--Hb_001397_020 Hb_000029_210 Hb_000029_210 Hb_010883_160--Hb_000029_210 Hb_010883_160--Hb_003549_100 Hb_000402_060 Hb_000402_060 Hb_010883_160--Hb_000402_060 Hb_010883_160--Hb_000076_240 Hb_001232_070 Hb_001232_070 Hb_003151_020--Hb_001232_070 Hb_002391_340 Hb_002391_340 Hb_003151_020--Hb_002391_340 Hb_001472_150 Hb_001472_150 Hb_003151_020--Hb_001472_150 Hb_008195_090 Hb_008195_090 Hb_003151_020--Hb_008195_090 Hb_003151_020--Hb_006483_040 Hb_000329_120 Hb_000329_120 Hb_003151_020--Hb_000329_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.079282 6.93953 15.9639 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0124493 0.0237805 0.489077 24.2131

CAGE analysis