Hb_002073_140

Information

Type -
Description -
Location Contig2073: 87738-88411
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_140 0.0 - - -
2 Hb_004162_100 0.1815240556 - - conserved hypothetical protein [Ricinus communis]
3 Hb_150651_050 0.1908365031 - - phosphoglycerate mutase, putative [Ricinus communis]
4 Hb_000345_040 0.2118916947 rubber biosynthesis Gene Name: REF4 -
5 Hb_004077_030 0.2138910559 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
6 Hb_003030_080 0.2154911817 - - multidrug resistance pump, putative [Ricinus communis]
7 Hb_028977_020 0.2191057338 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
8 Hb_000120_120 0.2202301629 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
9 Hb_005918_030 0.2225902991 - - hypothetical protein JCGZ_24769 [Jatropha curcas]
10 Hb_027892_010 0.2239863224 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
11 Hb_000345_030 0.2291211024 - - REF-like stress related protein 1 [Hevea brasiliensis]
12 Hb_000249_130 0.2310334018 - - hypothetical protein RCOM_0254640 [Ricinus communis]
13 Hb_000419_040 0.2333850278 - - chorismate synthase [Hevea brasiliensis]
14 Hb_004800_160 0.2381421534 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
15 Hb_000130_370 0.2387673352 - - PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]
16 Hb_000115_060 0.2432284363 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
17 Hb_010710_030 0.2448306598 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
18 Hb_014549_020 0.24591621 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
19 Hb_024952_010 0.2460428479 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
20 Hb_001141_470 0.2461371565 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]

Gene co-expression network

sample Hb_002073_140 Hb_002073_140 Hb_004162_100 Hb_004162_100 Hb_002073_140--Hb_004162_100 Hb_150651_050 Hb_150651_050 Hb_002073_140--Hb_150651_050 Hb_000345_040 Hb_000345_040 Hb_002073_140--Hb_000345_040 Hb_004077_030 Hb_004077_030 Hb_002073_140--Hb_004077_030 Hb_003030_080 Hb_003030_080 Hb_002073_140--Hb_003030_080 Hb_028977_020 Hb_028977_020 Hb_002073_140--Hb_028977_020 Hb_005918_030 Hb_005918_030 Hb_004162_100--Hb_005918_030 Hb_176681_010 Hb_176681_010 Hb_004162_100--Hb_176681_010 Hb_000602_010 Hb_000602_010 Hb_004162_100--Hb_000602_010 Hb_002681_110 Hb_002681_110 Hb_004162_100--Hb_002681_110 Hb_157022_020 Hb_157022_020 Hb_004162_100--Hb_157022_020 Hb_001004_040 Hb_001004_040 Hb_150651_050--Hb_001004_040 Hb_004800_160 Hb_004800_160 Hb_150651_050--Hb_004800_160 Hb_000120_120 Hb_000120_120 Hb_150651_050--Hb_000120_120 Hb_150651_050--Hb_003030_080 Hb_002739_110 Hb_002739_110 Hb_150651_050--Hb_002739_110 Hb_024952_010 Hb_024952_010 Hb_150651_050--Hb_024952_010 Hb_000345_030 Hb_000345_030 Hb_000345_040--Hb_000345_030 Hb_006831_010 Hb_006831_010 Hb_000345_040--Hb_006831_010 Hb_006132_060 Hb_006132_060 Hb_000345_040--Hb_006132_060 Hb_010174_120 Hb_010174_120 Hb_000345_040--Hb_010174_120 Hb_004659_120 Hb_004659_120 Hb_000345_040--Hb_004659_120 Hb_024505_040 Hb_024505_040 Hb_000345_040--Hb_024505_040 Hb_000012_230 Hb_000012_230 Hb_004077_030--Hb_000012_230 Hb_004077_030--Hb_000345_030 Hb_001584_300 Hb_001584_300 Hb_004077_030--Hb_001584_300 Hb_009265_060 Hb_009265_060 Hb_004077_030--Hb_009265_060 Hb_012423_050 Hb_012423_050 Hb_004077_030--Hb_012423_050 Hb_002539_080 Hb_002539_080 Hb_004077_030--Hb_002539_080 Hb_001606_070 Hb_001606_070 Hb_003030_080--Hb_001606_070 Hb_000249_130 Hb_000249_130 Hb_003030_080--Hb_000249_130 Hb_001396_230 Hb_001396_230 Hb_003030_080--Hb_001396_230 Hb_003497_030 Hb_003497_030 Hb_003030_080--Hb_003497_030 Hb_000849_040 Hb_000849_040 Hb_003030_080--Hb_000849_040 Hb_005779_100 Hb_005779_100 Hb_003030_080--Hb_005779_100 Hb_028977_020--Hb_000120_120 Hb_028977_020--Hb_150651_050 Hb_027892_010 Hb_027892_010 Hb_028977_020--Hb_027892_010 Hb_000249_090 Hb_000249_090 Hb_028977_020--Hb_000249_090 Hb_001267_030 Hb_001267_030 Hb_028977_020--Hb_001267_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.245234 0 0 0.0994674 0.227948 0.114076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.432877 0.0850428 0.590747 0.174884 0

CAGE analysis