Hb_002073_200

Information

Type -
Description -
Location Contig2073: 123733-129598
Sequence    

Annotation

kegg
ID tcc:TCM_010105
description Phosphatase 2A-2
nr
ID XP_007044439.1
description Phosphatase 2A-2 [Theobroma cacao]
swissprot
ID Q9ZSE4
description Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Hevea brasiliensis GN=PP2A PE=2 SV=1
trembl
ID A0A061E5N4
description Serine/threonine-protein phosphatase OS=Theobroma cacao GN=TCM_010105 PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase pp2a catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21384: 123940-129457 , PASA_asmbl_21385: 127446-127731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_200 0.0 - - Phosphatase 2A-2 [Theobroma cacao]
2 Hb_000868_110 0.051222627 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
3 Hb_013358_040 0.0592662826 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
4 Hb_000025_730 0.0607868969 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
5 Hb_000738_020 0.0635943796 - - zinc finger protein, putative [Ricinus communis]
6 Hb_164010_040 0.0644995661 - - serine/threonine protein kinase, putative [Ricinus communis]
7 Hb_095296_010 0.0655458986 - - PREDICTED: syntaxin-32 [Jatropha curcas]
8 Hb_000869_080 0.0674472846 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
9 Hb_062226_130 0.0700835152 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
10 Hb_004208_030 0.0708192511 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
11 Hb_003001_080 0.0726109901 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
12 Hb_033006_030 0.0731588929 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
13 Hb_000069_310 0.0733512639 - - ubiquitin ligase [Cucumis melo subsp. melo]
14 Hb_003849_110 0.0733981093 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
15 Hb_000454_130 0.0756147781 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
16 Hb_006588_210 0.0768210898 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
17 Hb_002028_210 0.0775657871 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
18 Hb_001247_250 0.0787021701 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
19 Hb_002754_010 0.0796113053 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
20 Hb_000172_430 0.0803734523 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002073_200 Hb_002073_200 Hb_000868_110 Hb_000868_110 Hb_002073_200--Hb_000868_110 Hb_013358_040 Hb_013358_040 Hb_002073_200--Hb_013358_040 Hb_000025_730 Hb_000025_730 Hb_002073_200--Hb_000025_730 Hb_000738_020 Hb_000738_020 Hb_002073_200--Hb_000738_020 Hb_164010_040 Hb_164010_040 Hb_002073_200--Hb_164010_040 Hb_095296_010 Hb_095296_010 Hb_002073_200--Hb_095296_010 Hb_000868_110--Hb_095296_010 Hb_000868_110--Hb_164010_040 Hb_003001_080 Hb_003001_080 Hb_000868_110--Hb_003001_080 Hb_021576_110 Hb_021576_110 Hb_000868_110--Hb_021576_110 Hb_000869_080 Hb_000869_080 Hb_000868_110--Hb_000869_080 Hb_000069_310 Hb_000069_310 Hb_013358_040--Hb_000069_310 Hb_000915_180 Hb_000915_180 Hb_013358_040--Hb_000915_180 Hb_013358_040--Hb_164010_040 Hb_003428_010 Hb_003428_010 Hb_013358_040--Hb_003428_010 Hb_013358_040--Hb_000869_080 Hb_024621_040 Hb_024621_040 Hb_000025_730--Hb_024621_040 Hb_003849_110 Hb_003849_110 Hb_000025_730--Hb_003849_110 Hb_000172_430 Hb_000172_430 Hb_000025_730--Hb_000172_430 Hb_000025_730--Hb_000069_310 Hb_162275_050 Hb_162275_050 Hb_000025_730--Hb_162275_050 Hb_062226_130 Hb_062226_130 Hb_000738_020--Hb_062226_130 Hb_012239_020 Hb_012239_020 Hb_000738_020--Hb_012239_020 Hb_005162_090 Hb_005162_090 Hb_000738_020--Hb_005162_090 Hb_000738_020--Hb_003849_110 Hb_000738_020--Hb_000869_080 Hb_002754_010 Hb_002754_010 Hb_164010_040--Hb_002754_010 Hb_164010_040--Hb_000869_080 Hb_164010_040--Hb_062226_130 Hb_001278_100 Hb_001278_100 Hb_164010_040--Hb_001278_100 Hb_005116_060 Hb_005116_060 Hb_095296_010--Hb_005116_060 Hb_003020_270 Hb_003020_270 Hb_095296_010--Hb_003020_270 Hb_006816_350 Hb_006816_350 Hb_095296_010--Hb_006816_350 Hb_095296_010--Hb_000869_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.5581 53.4962 49.3233 40.5395 34.3021 31.3175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.8724 50.3112 41.2589 23.2585 32.4497

CAGE analysis