Hb_002078_020

Information

Type -
Description -
Location Contig2078: 12592-19730
Sequence    

Annotation

kegg
ID vvi:100261458
description proteasome subunit beta type-5
nr
ID XP_012085655.1
description PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
swissprot
ID O24361
description Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1
trembl
ID A0A067JVG8
description Proteasome subunit beta type OS=Jatropha curcas GN=JCGZ_17941 PE=3 SV=1
Gene Ontology
ID GO:0005839
description proteasome subunit beta type-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21404: 12636-19593 , PASA_asmbl_21405: 13877-14270
cDNA
(Sanger)
(ID:Location)		 029_N12.ab1: 12645-19005 , 037_G15.ab1: 12607-19007

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_020 0.0 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
2 Hb_000523_050 0.0569632314 - - microsomal glutathione s-transferase, putative [Ricinus communis]
3 Hb_000853_230 0.0637925892 - - syntaxin, putative [Ricinus communis]
4 Hb_001926_030 0.0668623744 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
5 Hb_004055_150 0.0674895205 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006620_020 0.0678571941 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
7 Hb_001493_030 0.0703791007 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
8 Hb_007317_110 0.0714773638 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
9 Hb_009646_030 0.0725152623 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003813_040 0.0733438241 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
11 Hb_006827_020 0.0735509833 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002686_250 0.0753035369 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
13 Hb_000777_050 0.0756235956 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
14 Hb_008864_110 0.0756702709 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
15 Hb_000538_100 0.0757501268 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007592_030 0.0758375249 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_057878_010 0.0768541177 - - hypothetical protein VITISV_036304 [Vitis vinifera]
18 Hb_002835_370 0.0779689504 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
19 Hb_002400_470 0.0781918105 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_000630_050 0.0784659853 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002078_020 Hb_002078_020 Hb_000523_050 Hb_000523_050 Hb_002078_020--Hb_000523_050 Hb_000853_230 Hb_000853_230 Hb_002078_020--Hb_000853_230 Hb_001926_030 Hb_001926_030 Hb_002078_020--Hb_001926_030 Hb_004055_150 Hb_004055_150 Hb_002078_020--Hb_004055_150 Hb_006620_020 Hb_006620_020 Hb_002078_020--Hb_006620_020 Hb_001493_030 Hb_001493_030 Hb_002078_020--Hb_001493_030 Hb_000395_020 Hb_000395_020 Hb_000523_050--Hb_000395_020 Hb_003813_130 Hb_003813_130 Hb_000523_050--Hb_003813_130 Hb_011930_160 Hb_011930_160 Hb_000523_050--Hb_011930_160 Hb_000538_100 Hb_000538_100 Hb_000523_050--Hb_000538_100 Hb_000270_630 Hb_000270_630 Hb_000523_050--Hb_000270_630 Hb_000853_230--Hb_006620_020 Hb_000853_230--Hb_004055_150 Hb_000879_200 Hb_000879_200 Hb_000853_230--Hb_000879_200 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_000853_230--Hb_001926_030 Hb_001926_030--Hb_004055_150 Hb_001926_030--Hb_000879_200 Hb_002686_250 Hb_002686_250 Hb_001926_030--Hb_002686_250 Hb_001926_030--Hb_006620_020 Hb_000010_400 Hb_000010_400 Hb_001926_030--Hb_000010_400 Hb_004055_150--Hb_002686_250 Hb_004055_150--Hb_006620_020 Hb_006960_050 Hb_006960_050 Hb_004055_150--Hb_006960_050 Hb_005993_050 Hb_005993_050 Hb_004055_150--Hb_005993_050 Hb_006620_020--Hb_000879_200 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110 Hb_000700_140 Hb_000700_140 Hb_001493_030--Hb_000700_140 Hb_007317_110 Hb_007317_110 Hb_001493_030--Hb_007317_110 Hb_006827_020 Hb_006827_020 Hb_001493_030--Hb_006827_020 Hb_000152_380 Hb_000152_380 Hb_001493_030--Hb_000152_380 Hb_004221_020 Hb_004221_020 Hb_001493_030--Hb_004221_020 Hb_000618_030 Hb_000618_030 Hb_001493_030--Hb_000618_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.2085 50.2913 57.6008 55.4099 87.8912 84.3227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.6655 45.1708 69.1464 56.248 31.7045

CAGE analysis