Hb_002078_040

Information

Type -
Description -
Location Contig2078: 29232-33185
Sequence    

Annotation

kegg
ID rcu:RCOM_1080850
description protein with unknown function (EC:1.3.1.74)
nr
ID XP_002514942.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9C9N5
description Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=2 SV=1
trembl
ID B9RMH3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080850 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive leucine-rich repeat receptor-like protein kinase at1g66830

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21406: 29305-29892 , PASA_asmbl_21407: 29905-33492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_040 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000050_120 0.0583758092 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
3 Hb_003304_080 0.0800076803 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
4 Hb_007810_040 0.0856806515 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
5 Hb_012654_020 0.086287899 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002172_030 0.0881473246 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
7 Hb_154381_050 0.1008179083 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001628_110 0.1018512007 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
9 Hb_005410_010 0.1079680586 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
10 Hb_001776_080 0.1087319856 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
11 Hb_000300_540 0.1105812508 - - PREDICTED: syntaxin-132 [Jatropha curcas]
12 Hb_011609_190 0.1110658583 - - 14-3-3 protein 2 [Hevea brasiliensis]
13 Hb_000088_180 0.1128797625 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
14 Hb_000365_350 0.114219521 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
15 Hb_007178_010 0.1143711867 - - pseudo-hevein [Hevea brasiliensis]
16 Hb_011021_030 0.1164952374 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
17 Hb_006029_010 0.1202906569 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
18 Hb_003507_020 0.1211801423 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
19 Hb_000300_530 0.1224844372 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
20 Hb_002149_040 0.1234959199 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002078_040 Hb_002078_040 Hb_000050_120 Hb_000050_120 Hb_002078_040--Hb_000050_120 Hb_003304_080 Hb_003304_080 Hb_002078_040--Hb_003304_080 Hb_007810_040 Hb_007810_040 Hb_002078_040--Hb_007810_040 Hb_012654_020 Hb_012654_020 Hb_002078_040--Hb_012654_020 Hb_002172_030 Hb_002172_030 Hb_002078_040--Hb_002172_030 Hb_154381_050 Hb_154381_050 Hb_002078_040--Hb_154381_050 Hb_000050_120--Hb_003304_080 Hb_000365_350 Hb_000365_350 Hb_000050_120--Hb_000365_350 Hb_000050_120--Hb_002172_030 Hb_000050_120--Hb_012654_020 Hb_000050_120--Hb_007810_040 Hb_003304_080--Hb_007810_040 Hb_095397_010 Hb_095397_010 Hb_003304_080--Hb_095397_010 Hb_043637_010 Hb_043637_010 Hb_003304_080--Hb_043637_010 Hb_003304_080--Hb_012654_020 Hb_007178_010 Hb_007178_010 Hb_007810_040--Hb_007178_010 Hb_002232_180 Hb_002232_180 Hb_007810_040--Hb_002232_180 Hb_007810_040--Hb_095397_010 Hb_007810_040--Hb_043637_010 Hb_012654_020--Hb_002172_030 Hb_005410_010 Hb_005410_010 Hb_012654_020--Hb_005410_010 Hb_011609_190 Hb_011609_190 Hb_012654_020--Hb_011609_190 Hb_001776_080 Hb_001776_080 Hb_012654_020--Hb_001776_080 Hb_001846_080 Hb_001846_080 Hb_002172_030--Hb_001846_080 Hb_002172_030--Hb_005410_010 Hb_002172_030--Hb_011609_190 Hb_002172_030--Hb_154381_050 Hb_004156_060 Hb_004156_060 Hb_154381_050--Hb_004156_060 Hb_001115_050 Hb_001115_050 Hb_154381_050--Hb_001115_050 Hb_154381_050--Hb_005410_010 Hb_006029_010 Hb_006029_010 Hb_154381_050--Hb_006029_010 Hb_154381_050--Hb_012654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.8303 6.77596 1.95398 12.2319 110.067 76.3956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.5886 29.547 36.244 6.01667 4.50424

CAGE analysis