Hb_002078_160

Information

Type -
Description -
Location Contig2078: 112127-115695
Sequence    

Annotation

kegg
ID rcu:RCOM_1430320
description catalytic, putative
nr
ID XP_012089115.1
description PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
swissprot
ID Q6DBG8
description Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana GN=ARAD1 PE=1 SV=1
trembl
ID A0A067JVJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23387 PE=4 SV=1
Gene Ontology
ID GO:0050508
description probable arabinosyltransferase arad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21428: 112129-115543
cDNA
(Sanger)
(ID:Location)		 037_J18.ab1: 112131-114140

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_160 0.0 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
2 Hb_004223_190 0.0997357645 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
3 Hb_001640_030 0.1032863281 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
4 Hb_090051_030 0.105396855 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
5 Hb_000705_120 0.1079337922 - - glycosyltransferase, putative [Ricinus communis]
6 Hb_152202_010 0.109896028 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
7 Hb_003994_280 0.1108893121 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
8 Hb_011486_040 0.1146473743 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
9 Hb_001482_040 0.1149185916 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005023_010 0.1154612815 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
11 Hb_009851_050 0.1202416796 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
12 Hb_002631_070 0.1212171029 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
13 Hb_017295_010 0.121696199 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
14 Hb_058999_030 0.1225896701 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
15 Hb_000107_210 0.1233900412 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
16 Hb_001948_130 0.1243844889 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
17 Hb_000392_370 0.1248703978 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
18 Hb_000370_020 0.1252685161 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002248_110 0.1275961961 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
20 Hb_082821_010 0.1277069703 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002078_160 Hb_002078_160 Hb_004223_190 Hb_004223_190 Hb_002078_160--Hb_004223_190 Hb_001640_030 Hb_001640_030 Hb_002078_160--Hb_001640_030 Hb_090051_030 Hb_090051_030 Hb_002078_160--Hb_090051_030 Hb_000705_120 Hb_000705_120 Hb_002078_160--Hb_000705_120 Hb_152202_010 Hb_152202_010 Hb_002078_160--Hb_152202_010 Hb_003994_280 Hb_003994_280 Hb_002078_160--Hb_003994_280 Hb_000281_110 Hb_000281_110 Hb_004223_190--Hb_000281_110 Hb_000135_030 Hb_000135_030 Hb_004223_190--Hb_000135_030 Hb_001482_040 Hb_001482_040 Hb_004223_190--Hb_001482_040 Hb_011486_040 Hb_011486_040 Hb_004223_190--Hb_011486_040 Hb_001898_210 Hb_001898_210 Hb_004223_190--Hb_001898_210 Hb_002631_070 Hb_002631_070 Hb_001640_030--Hb_002631_070 Hb_001640_030--Hb_003994_280 Hb_001640_030--Hb_152202_010 Hb_000362_150 Hb_000362_150 Hb_001640_030--Hb_000362_150 Hb_004680_120 Hb_004680_120 Hb_001640_030--Hb_004680_120 Hb_000050_190 Hb_000050_190 Hb_001640_030--Hb_000050_190 Hb_082821_010 Hb_082821_010 Hb_090051_030--Hb_082821_010 Hb_001633_130 Hb_001633_130 Hb_090051_030--Hb_001633_130 Hb_000146_050 Hb_000146_050 Hb_090051_030--Hb_000146_050 Hb_005023_010 Hb_005023_010 Hb_090051_030--Hb_005023_010 Hb_033642_030 Hb_033642_030 Hb_090051_030--Hb_033642_030 Hb_006455_120 Hb_006455_120 Hb_090051_030--Hb_006455_120 Hb_000705_120--Hb_152202_010 Hb_000915_110 Hb_000915_110 Hb_000705_120--Hb_000915_110 Hb_000705_120--Hb_090051_030 Hb_009529_030 Hb_009529_030 Hb_000705_120--Hb_009529_030 Hb_000705_120--Hb_001482_040 Hb_007919_100 Hb_007919_100 Hb_152202_010--Hb_007919_100 Hb_012194_050 Hb_012194_050 Hb_152202_010--Hb_012194_050 Hb_032050_040 Hb_032050_040 Hb_152202_010--Hb_032050_040 Hb_152202_010--Hb_000362_150 Hb_152202_010--Hb_001898_210 Hb_003994_280--Hb_002631_070 Hb_000213_010 Hb_000213_010 Hb_003994_280--Hb_000213_010 Hb_000048_060 Hb_000048_060 Hb_003994_280--Hb_000048_060 Hb_001018_110 Hb_001018_110 Hb_003994_280--Hb_001018_110 Hb_003994_280--Hb_090051_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.131 5.45901 9.87926 21.3875 15.6874 19.7485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.33111 6.29872 14.6508 3.68972 15.1367

CAGE analysis