Hb_002078_170

Information

Type -
Description -
Location Contig2078: 118754-123818
Sequence    

Annotation

kegg
ID cit:102629693
description ELMO domain-containing protein A-like
nr
ID XP_007044044.1
description ELMO/CED-12 domain-containing protein isoform 3 [Theobroma cacao]
swissprot
ID Q54YW1
description ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1
trembl
ID A0A061E4H4
description ELMO/CED-12 domain-containing protein isoform 3 OS=Theobroma cacao GN=TCM_008856 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21429: 118807-123717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_170 0.0 - - ELMO/CED-12 domain-containing protein isoform 3 [Theobroma cacao]
2 Hb_001287_010 0.208111684 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
3 Hb_005599_060 0.2092880504 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
4 Hb_002150_060 0.2104678214 - - PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]
5 Hb_006153_080 0.2383036103 - - flavin-containing monooxygenase-related family protein [Populus trichocarpa]
6 Hb_001310_090 0.2576327494 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
7 Hb_001486_010 0.2620017935 - - adenylsulfate kinase, putative [Ricinus communis]
8 Hb_016564_010 0.2651740644 - - PREDICTED: uncharacterized protein LOC101764501 [Setaria italica]
9 Hb_009707_030 0.2653730996 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
10 Hb_003333_050 0.2694525287 - - hypothetical protein JCGZ_20906 [Jatropha curcas]
11 Hb_001943_020 0.2746675199 - - PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
12 Hb_007943_060 0.276769422 - - Rop5 [Hevea brasiliensis]
13 Hb_000069_170 0.2792221239 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
14 Hb_183672_010 0.279354747 - - PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
15 Hb_002194_090 0.2843797283 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000712_050 0.2846421765 - - PREDICTED: inositol oxygenase 1-like isoform X1 [Citrus sinensis]
17 Hb_005542_060 0.2853547058 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_001662_060 0.2857312505 - - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 [Theobroma cacao]
19 Hb_008760_010 0.286960174 - - berberine bridge enzyme [Hevea brasiliensis]
20 Hb_001004_150 0.2872337161 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_002078_170 Hb_002078_170 Hb_001287_010 Hb_001287_010 Hb_002078_170--Hb_001287_010 Hb_005599_060 Hb_005599_060 Hb_002078_170--Hb_005599_060 Hb_002150_060 Hb_002150_060 Hb_002078_170--Hb_002150_060 Hb_006153_080 Hb_006153_080 Hb_002078_170--Hb_006153_080 Hb_001310_090 Hb_001310_090 Hb_002078_170--Hb_001310_090 Hb_001486_010 Hb_001486_010 Hb_002078_170--Hb_001486_010 Hb_007943_060 Hb_007943_060 Hb_001287_010--Hb_007943_060 Hb_009707_030 Hb_009707_030 Hb_001287_010--Hb_009707_030 Hb_001545_070 Hb_001545_070 Hb_001287_010--Hb_001545_070 Hb_001287_010--Hb_002150_060 Hb_000538_180 Hb_000538_180 Hb_001287_010--Hb_000538_180 Hb_005599_060--Hb_001310_090 Hb_183672_010 Hb_183672_010 Hb_005599_060--Hb_183672_010 Hb_000190_240 Hb_000190_240 Hb_005599_060--Hb_000190_240 Hb_000032_450 Hb_000032_450 Hb_005599_060--Hb_000032_450 Hb_005599_060--Hb_001287_010 Hb_000130_110 Hb_000130_110 Hb_002150_060--Hb_000130_110 Hb_003994_190 Hb_003994_190 Hb_002150_060--Hb_003994_190 Hb_001545_100 Hb_001545_100 Hb_002150_060--Hb_001545_100 Hb_001096_110 Hb_001096_110 Hb_002150_060--Hb_001096_110 Hb_002150_060--Hb_006153_080 Hb_000712_050 Hb_000712_050 Hb_002150_060--Hb_000712_050 Hb_004679_050 Hb_004679_050 Hb_006153_080--Hb_004679_050 Hb_005542_060 Hb_005542_060 Hb_006153_080--Hb_005542_060 Hb_000340_310 Hb_000340_310 Hb_006153_080--Hb_000340_310 Hb_001277_090 Hb_001277_090 Hb_006153_080--Hb_001277_090 Hb_006153_080--Hb_001096_110 Hb_006153_080--Hb_000130_110 Hb_001310_090--Hb_009707_030 Hb_002045_080 Hb_002045_080 Hb_001310_090--Hb_002045_080 Hb_002173_050 Hb_002173_050 Hb_001310_090--Hb_002173_050 Hb_003197_010 Hb_003197_010 Hb_001310_090--Hb_003197_010 Hb_075247_010 Hb_075247_010 Hb_001486_010--Hb_075247_010 Hb_000788_060 Hb_000788_060 Hb_001486_010--Hb_000788_060 Hb_000239_020 Hb_000239_020 Hb_001486_010--Hb_000239_020 Hb_009111_020 Hb_009111_020 Hb_001486_010--Hb_009111_020 Hb_001221_330 Hb_001221_330 Hb_001486_010--Hb_001221_330 Hb_007262_030 Hb_007262_030 Hb_001486_010--Hb_007262_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.74706 1.03403 8.10588 15.2562 0.755938 1.11832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.60853 3.95595 43.9753 1.72843 4.38578

CAGE analysis