Hb_002078_180

Information

Type -
Description -
Location Contig2078: 128846-133074
Sequence    

Annotation

kegg
ID rcu:RCOM_1080570
description PLE, putative
nr
ID XP_012085669.1
description PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
swissprot
ID Q9C7G0
description 65-kDa microtubule-associated protein 8 OS=Arabidopsis thaliana GN=MAP65-8 PE=1 SV=2
trembl
ID B9RMF5
description PLE, putative OS=Ricinus communis GN=RCOM_1080570 PE=4 SV=1
Gene Ontology
ID GO:0008017
description 65-kda microtubule-associated protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21432: 128574-129754 , PASA_asmbl_21433: 129829-133028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_180 0.0 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
2 Hb_005686_040 0.0379656733 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002835_360 0.0396231631 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
4 Hb_015807_090 0.0459639175 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
5 Hb_000086_490 0.0464822527 - - cellulose synthase [Populus tomentosa]
6 Hb_009476_080 0.046731016 - - BnaA03g18920D [Brassica napus]
7 Hb_001935_060 0.0472895266 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
8 Hb_001051_060 0.0538330065 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
9 Hb_000193_320 0.0538928901 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000173_240 0.0543502286 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001377_220 0.0553333555 - - dopamine beta-monooxygenase, putative [Ricinus communis]
12 Hb_005523_030 0.055671732 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
13 Hb_003747_160 0.0601712444 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010166_010 0.0673126105 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
15 Hb_000328_030 0.0711431623 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
16 Hb_000776_090 0.0714283596 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
17 Hb_002662_070 0.0716601152 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
18 Hb_038927_020 0.072692686 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
19 Hb_002311_010 0.0754701235 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
20 Hb_001500_090 0.077396495 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002078_180 Hb_002078_180 Hb_005686_040 Hb_005686_040 Hb_002078_180--Hb_005686_040 Hb_002835_360 Hb_002835_360 Hb_002078_180--Hb_002835_360 Hb_015807_090 Hb_015807_090 Hb_002078_180--Hb_015807_090 Hb_000086_490 Hb_000086_490 Hb_002078_180--Hb_000086_490 Hb_009476_080 Hb_009476_080 Hb_002078_180--Hb_009476_080 Hb_001935_060 Hb_001935_060 Hb_002078_180--Hb_001935_060 Hb_001051_060 Hb_001051_060 Hb_005686_040--Hb_001051_060 Hb_005686_040--Hb_000086_490 Hb_005686_040--Hb_002835_360 Hb_005523_030 Hb_005523_030 Hb_005686_040--Hb_005523_030 Hb_005686_040--Hb_015807_090 Hb_002835_360--Hb_009476_080 Hb_003747_160 Hb_003747_160 Hb_002835_360--Hb_003747_160 Hb_002835_360--Hb_015807_090 Hb_002835_360--Hb_001051_060 Hb_015807_090--Hb_000086_490 Hb_015807_090--Hb_005523_030 Hb_015807_090--Hb_003747_160 Hb_015807_090--Hb_001051_060 Hb_000086_490--Hb_005523_030 Hb_000086_490--Hb_001051_060 Hb_000328_030 Hb_000328_030 Hb_000086_490--Hb_000328_030 Hb_009476_080--Hb_015807_090 Hb_009476_080--Hb_003747_160 Hb_009476_080--Hb_005686_040 Hb_009476_080--Hb_001051_060 Hb_001377_220 Hb_001377_220 Hb_001935_060--Hb_001377_220 Hb_010166_010 Hb_010166_010 Hb_001935_060--Hb_010166_010 Hb_002311_010 Hb_002311_010 Hb_001935_060--Hb_002311_010 Hb_001935_060--Hb_005686_040 Hb_038927_020 Hb_038927_020 Hb_001935_060--Hb_038927_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0578885 2.13123 3.64663 43.613 0.0614614 0.0510243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0608836 0.0159689 0.0303564 0.380858 30.1163

CAGE analysis