Hb_002078_190

Information

Type -
Description -
Location Contig2078: 139267-139795
Sequence    

Annotation

kegg
ID rcu:RCOM_1080550
description hypothetical protein
nr
ID XP_002514922.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMF3
description Transcription and mRNA export factor SUS1 OS=Ricinus communis GN=SUS1 PE=3 SV=1
Gene Ontology
ID GO:0000124
description transcription and mrna export factor eny2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21434: 139465-142842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_157968_010 0.1588798299 - - Disease resistance protein RPS5, putative [Ricinus communis]
3 Hb_148658_010 0.1990704844 - - -
4 Hb_007889_050 0.2110407806 - - Kynurenine formamidase [Gossypium arboreum]
5 Hb_001708_010 0.2410401417 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
6 Hb_001950_040 0.2440422768 - - -
7 Hb_116367_010 0.2448095305 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Pyrus x bretschneideri]
8 Hb_022614_010 0.2468030154 - - -
9 Hb_106873_020 0.2506260918 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
10 Hb_162090_010 0.2561965107 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
11 Hb_000066_180 0.2612448285 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
12 Hb_025905_020 0.2680131805 - - major allergen Pru ar 1-like [Jatropha curcas]
13 Hb_027287_010 0.268266438 - - conserved hypothetical protein [Ricinus communis]
14 Hb_133648_010 0.2701646274 - - -
15 Hb_060054_010 0.2703885746 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
16 Hb_114079_010 0.2705387387 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
17 Hb_048183_010 0.2755241089 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
18 Hb_003531_010 0.2778313831 - - scab resistance family protein [Populus trichocarpa]
19 Hb_090545_010 0.2876890397 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
20 Hb_006162_020 0.2904968788 - - -

Gene co-expression network

sample Hb_002078_190 Hb_002078_190 Hb_157968_010 Hb_157968_010 Hb_002078_190--Hb_157968_010 Hb_148658_010 Hb_148658_010 Hb_002078_190--Hb_148658_010 Hb_007889_050 Hb_007889_050 Hb_002078_190--Hb_007889_050 Hb_001708_010 Hb_001708_010 Hb_002078_190--Hb_001708_010 Hb_001950_040 Hb_001950_040 Hb_002078_190--Hb_001950_040 Hb_116367_010 Hb_116367_010 Hb_002078_190--Hb_116367_010 Hb_157968_010--Hb_001708_010 Hb_157968_010--Hb_148658_010 Hb_048183_010 Hb_048183_010 Hb_157968_010--Hb_048183_010 Hb_157968_010--Hb_116367_010 Hb_001810_020 Hb_001810_020 Hb_157968_010--Hb_001810_020 Hb_106873_020 Hb_106873_020 Hb_148658_010--Hb_106873_020 Hb_027287_010 Hb_027287_010 Hb_148658_010--Hb_027287_010 Hb_000066_180 Hb_000066_180 Hb_148658_010--Hb_000066_180 Hb_148658_010--Hb_116367_010 Hb_000869_060 Hb_000869_060 Hb_007889_050--Hb_000869_060 Hb_000893_010 Hb_000893_010 Hb_007889_050--Hb_000893_010 Hb_072290_010 Hb_072290_010 Hb_007889_050--Hb_072290_010 Hb_007889_050--Hb_106873_020 Hb_007889_050--Hb_001950_040 Hb_007441_090 Hb_007441_090 Hb_001708_010--Hb_007441_090 Hb_106688_010 Hb_106688_010 Hb_001708_010--Hb_106688_010 Hb_114079_010 Hb_114079_010 Hb_001708_010--Hb_114079_010 Hb_003740_040 Hb_003740_040 Hb_001708_010--Hb_003740_040 Hb_001708_010--Hb_048183_010 Hb_116638_010 Hb_116638_010 Hb_001950_040--Hb_116638_010 Hb_007083_020 Hb_007083_020 Hb_001950_040--Hb_007083_020 Hb_000086_100 Hb_000086_100 Hb_001950_040--Hb_000086_100 Hb_002974_050 Hb_002974_050 Hb_001950_040--Hb_002974_050 Hb_003371_170 Hb_003371_170 Hb_001950_040--Hb_003371_170 Hb_169329_010 Hb_169329_010 Hb_001950_040--Hb_169329_010 Hb_003531_010 Hb_003531_010 Hb_116367_010--Hb_003531_010 Hb_003641_010 Hb_003641_010 Hb_116367_010--Hb_003641_010 Hb_116367_010--Hb_027287_010 Hb_013040_010 Hb_013040_010 Hb_116367_010--Hb_013040_010 Hb_001660_140 Hb_001660_140 Hb_116367_010--Hb_001660_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.37203 41.5979 0 104.774 2.72222 96.1961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.86424 2.85161 0 4.82761 0

CAGE analysis