Hb_002078_200

Information

Type -
Description -
Location Contig2078: 142569-148575
Sequence    

Annotation

kegg
ID rcu:RCOM_1080540
description Mitochondrial import receptor subunit TOM20, putative
nr
ID XP_002514921.1
description Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
swissprot
ID P92792
description Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1
trembl
ID B9RMF2
description Mitochondrial import receptor subunit TOM20, putative OS=Ricinus communis GN=RCOM_1080540 PE=4 SV=1
Gene Ontology
ID GO:0005742
description mitochondrial import receptor subunit tom20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21434: 139465-142842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_200 0.0 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
2 Hb_007017_030 0.102073018 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
3 Hb_003813_050 0.1057125365 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
4 Hb_004109_310 0.1101161128 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
5 Hb_002197_050 0.1110409303 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
6 Hb_008406_190 0.1121821324 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
7 Hb_000466_140 0.1148807041 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
8 Hb_010423_040 0.1149834593 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
9 Hb_000749_190 0.1155777557 - - PREDICTED: nucleolar GTP-binding protein 2 [Populus euphratica]
10 Hb_002289_100 0.1188382912 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
11 Hb_006913_010 0.119565332 - - PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
12 Hb_000392_430 0.1197115429 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
13 Hb_004920_120 0.1198747831 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000003_320 0.1215263537 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
15 Hb_001828_190 0.1220531391 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
16 Hb_001314_050 0.1231020049 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
17 Hb_000031_120 0.1231446809 - - PREDICTED: uncharacterized protein LOC105637488 [Jatropha curcas]
18 Hb_000181_400 0.1233410931 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
19 Hb_000096_160 0.1235311863 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
20 Hb_002811_180 0.1242791778 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002078_200 Hb_002078_200 Hb_007017_030 Hb_007017_030 Hb_002078_200--Hb_007017_030 Hb_003813_050 Hb_003813_050 Hb_002078_200--Hb_003813_050 Hb_004109_310 Hb_004109_310 Hb_002078_200--Hb_004109_310 Hb_002197_050 Hb_002197_050 Hb_002078_200--Hb_002197_050 Hb_008406_190 Hb_008406_190 Hb_002078_200--Hb_008406_190 Hb_000466_140 Hb_000466_140 Hb_002078_200--Hb_000466_140 Hb_002893_080 Hb_002893_080 Hb_007017_030--Hb_002893_080 Hb_001279_150 Hb_001279_150 Hb_007017_030--Hb_001279_150 Hb_007017_030--Hb_008406_190 Hb_001828_190 Hb_001828_190 Hb_007017_030--Hb_001828_190 Hb_003633_030 Hb_003633_030 Hb_007017_030--Hb_003633_030 Hb_015934_070 Hb_015934_070 Hb_007017_030--Hb_015934_070 Hb_000312_080 Hb_000312_080 Hb_003813_050--Hb_000312_080 Hb_000181_050 Hb_000181_050 Hb_003813_050--Hb_000181_050 Hb_005725_270 Hb_005725_270 Hb_003813_050--Hb_005725_270 Hb_003813_050--Hb_002197_050 Hb_002889_030 Hb_002889_030 Hb_003813_050--Hb_002889_030 Hb_001348_020 Hb_001348_020 Hb_003813_050--Hb_001348_020 Hb_006913_010 Hb_006913_010 Hb_004109_310--Hb_006913_010 Hb_004109_310--Hb_007017_030 Hb_001571_050 Hb_001571_050 Hb_004109_310--Hb_001571_050 Hb_002481_080 Hb_002481_080 Hb_004109_310--Hb_002481_080 Hb_073973_100 Hb_073973_100 Hb_004109_310--Hb_073973_100 Hb_000665_060 Hb_000665_060 Hb_004109_310--Hb_000665_060 Hb_000137_090 Hb_000137_090 Hb_002197_050--Hb_000137_090 Hb_000948_160 Hb_000948_160 Hb_002197_050--Hb_000948_160 Hb_000431_170 Hb_000431_170 Hb_002197_050--Hb_000431_170 Hb_000003_320 Hb_000003_320 Hb_002197_050--Hb_000003_320 Hb_002197_050--Hb_000312_080 Hb_031340_050 Hb_031340_050 Hb_002197_050--Hb_031340_050 Hb_008406_190--Hb_002893_080 Hb_000103_080 Hb_000103_080 Hb_008406_190--Hb_000103_080 Hb_003333_060 Hb_003333_060 Hb_008406_190--Hb_003333_060 Hb_010423_040 Hb_010423_040 Hb_008406_190--Hb_010423_040 Hb_008406_190--Hb_001828_190 Hb_000111_320 Hb_000111_320 Hb_000466_140--Hb_000111_320 Hb_001247_310 Hb_001247_310 Hb_000466_140--Hb_001247_310 Hb_000392_430 Hb_000392_430 Hb_000466_140--Hb_000392_430 Hb_000749_190 Hb_000749_190 Hb_000466_140--Hb_000749_190 Hb_002811_180 Hb_002811_180 Hb_000466_140--Hb_002811_180 Hb_003847_130 Hb_003847_130 Hb_000466_140--Hb_003847_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.560312 0.54698 0.349695 1.08666 1.32737 1.36283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13034 1.68302 0.886285 1.89525 0.723076

CAGE analysis