Hb_002078_220

Information

Type -
Description -
Location Contig2078: 166244-172361
Sequence    

Annotation

kegg
ID rcu:RCOM_1080420
description hypothetical protein
nr
ID XP_012085674.1
description PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q54GB2
description CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum GN=ctdspl2 PE=3 SV=1
trembl
ID A0A067K4R9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17957 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ctd small phosphatase-like protein 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21437: 170259-172228
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_220 0.0 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
2 Hb_000886_050 0.0596304618 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
3 Hb_000070_080 0.0628696175 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
4 Hb_000076_160 0.068976852 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
5 Hb_008511_090 0.0708550707 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
6 Hb_008103_060 0.0719671092 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
7 Hb_002876_130 0.0721051287 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
8 Hb_002325_040 0.0726645795 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
9 Hb_000092_020 0.0748031352 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
10 Hb_003373_040 0.0767804029 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
11 Hb_000928_220 0.0780572292 - - PREDICTED: protein SCAI [Jatropha curcas]
12 Hb_111198_010 0.0781510829 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
13 Hb_000291_060 0.0786766222 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
14 Hb_000679_310 0.079863092 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
15 Hb_001205_200 0.0814717305 - - conserved hypothetical protein [Ricinus communis]
16 Hb_154114_010 0.0817709259 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
17 Hb_000594_040 0.081865685 - - hypothetical protein L484_013922 [Morus notabilis]
18 Hb_000308_030 0.0827027015 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
19 Hb_005306_160 0.0829370196 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
20 Hb_003175_030 0.0833516806 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]

Gene co-expression network

sample Hb_002078_220 Hb_002078_220 Hb_000886_050 Hb_000886_050 Hb_002078_220--Hb_000886_050 Hb_000070_080 Hb_000070_080 Hb_002078_220--Hb_000070_080 Hb_000076_160 Hb_000076_160 Hb_002078_220--Hb_000076_160 Hb_008511_090 Hb_008511_090 Hb_002078_220--Hb_008511_090 Hb_008103_060 Hb_008103_060 Hb_002078_220--Hb_008103_060 Hb_002876_130 Hb_002876_130 Hb_002078_220--Hb_002876_130 Hb_000861_080 Hb_000861_080 Hb_000886_050--Hb_000861_080 Hb_002890_290 Hb_002890_290 Hb_000886_050--Hb_002890_290 Hb_003464_090 Hb_003464_090 Hb_000886_050--Hb_003464_090 Hb_000886_050--Hb_000076_160 Hb_005653_090 Hb_005653_090 Hb_000886_050--Hb_005653_090 Hb_000070_080--Hb_008511_090 Hb_000070_080--Hb_008103_060 Hb_000479_220 Hb_000479_220 Hb_000070_080--Hb_000479_220 Hb_000162_280 Hb_000162_280 Hb_000070_080--Hb_000162_280 Hb_002078_110 Hb_002078_110 Hb_000070_080--Hb_002078_110 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_004109_030 Hb_004109_030 Hb_008511_090--Hb_004109_030 Hb_001005_190 Hb_001005_190 Hb_008511_090--Hb_001005_190 Hb_007163_120 Hb_007163_120 Hb_008511_090--Hb_007163_120 Hb_008511_090--Hb_000479_220 Hb_140049_040 Hb_140049_040 Hb_008103_060--Hb_140049_040 Hb_007635_030 Hb_007635_030 Hb_008103_060--Hb_007635_030 Hb_004195_200 Hb_004195_200 Hb_008103_060--Hb_004195_200 Hb_008103_060--Hb_002876_130 Hb_002043_140 Hb_002043_140 Hb_008103_060--Hb_002043_140 Hb_000289_040 Hb_000289_040 Hb_002876_130--Hb_000289_040 Hb_002876_130--Hb_000928_220 Hb_002876_130--Hb_140049_040 Hb_002876_130--Hb_002078_110 Hb_002876_130--Hb_004195_200 Hb_002876_130--Hb_000076_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3988 24.2801 12.6987 11.1879 15.0968 14.1732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7315 11.9157 9.27965 11.969 5.90554

CAGE analysis