Hb_002078_230

Information

Type -
Description -
Location Contig2078: 173732-179597
Sequence    

Annotation

kegg
ID rcu:RCOM_1080410
description protein with unknown function
nr
ID XP_012085897.1
description PREDICTED: HORMA domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q5M7C8
description HORMA domain-containing protein 1 OS=Xenopus laevis GN=hormad1 PE=2 SV=1
trembl
ID A0A067K3H8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17958 PE=4 SV=1
Gene Ontology
ID GO:0003677
description horma domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21439: 177234-178400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_230 0.0 - - PREDICTED: HORMA domain-containing protein 1 [Jatropha curcas]
2 Hb_010436_080 0.1334609396 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
3 Hb_000260_610 0.1477500378 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
4 Hb_009339_040 0.157128814 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000288_090 0.1596880988 - - unnamed protein product [Vitis vinifera]
6 Hb_007545_110 0.160312079 - - catalytic, putative [Ricinus communis]
7 Hb_000181_270 0.1609150256 - - ATP binding protein, putative [Ricinus communis]
8 Hb_002518_200 0.1731559589 - - Proliferating cell nuclear antigen [Theobroma cacao]
9 Hb_000175_300 0.1744657754 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
10 Hb_001235_160 0.1771366479 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002400_050 0.1781414231 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
12 Hb_022092_040 0.1797162372 - - PREDICTED: serine/arginine repetitive matrix protein 1 [Jatropha curcas]
13 Hb_000365_210 0.1802581909 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
14 Hb_006153_010 0.1861067496 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
15 Hb_013344_010 0.1891792479 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
16 Hb_000462_080 0.1909328124 - - PREDICTED: quercetin 3-O-methyltransferase 1 [Jatropha curcas]
17 Hb_006060_010 0.1913672735 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
18 Hb_006970_130 0.1922416701 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
19 Hb_001277_120 0.1930315722 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
20 Hb_001386_100 0.1938088175 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor PHERES 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002078_230 Hb_002078_230 Hb_010436_080 Hb_010436_080 Hb_002078_230--Hb_010436_080 Hb_000260_610 Hb_000260_610 Hb_002078_230--Hb_000260_610 Hb_009339_040 Hb_009339_040 Hb_002078_230--Hb_009339_040 Hb_000288_090 Hb_000288_090 Hb_002078_230--Hb_000288_090 Hb_007545_110 Hb_007545_110 Hb_002078_230--Hb_007545_110 Hb_000181_270 Hb_000181_270 Hb_002078_230--Hb_000181_270 Hb_000190_220 Hb_000190_220 Hb_010436_080--Hb_000190_220 Hb_000003_060 Hb_000003_060 Hb_010436_080--Hb_000003_060 Hb_004968_040 Hb_004968_040 Hb_010436_080--Hb_004968_040 Hb_010436_080--Hb_009339_040 Hb_006970_130 Hb_006970_130 Hb_010436_080--Hb_006970_130 Hb_013344_010 Hb_013344_010 Hb_000260_610--Hb_013344_010 Hb_006060_010 Hb_006060_010 Hb_000260_610--Hb_006060_010 Hb_000260_610--Hb_007545_110 Hb_002400_050 Hb_002400_050 Hb_000260_610--Hb_002400_050 Hb_003667_020 Hb_003667_020 Hb_000260_610--Hb_003667_020 Hb_004920_050 Hb_004920_050 Hb_000260_610--Hb_004920_050 Hb_000343_020 Hb_000343_020 Hb_009339_040--Hb_000343_020 Hb_011849_030 Hb_011849_030 Hb_009339_040--Hb_011849_030 Hb_004007_130 Hb_004007_130 Hb_009339_040--Hb_004007_130 Hb_002311_090 Hb_002311_090 Hb_009339_040--Hb_002311_090 Hb_027337_010 Hb_027337_010 Hb_009339_040--Hb_027337_010 Hb_024682_030 Hb_024682_030 Hb_009339_040--Hb_024682_030 Hb_000288_090--Hb_000181_270 Hb_000365_210 Hb_000365_210 Hb_000288_090--Hb_000365_210 Hb_000288_090--Hb_006970_130 Hb_000288_090--Hb_000003_060 Hb_000260_650 Hb_000260_650 Hb_000288_090--Hb_000260_650 Hb_000288_090--Hb_004920_050 Hb_038044_010 Hb_038044_010 Hb_007545_110--Hb_038044_010 Hb_022092_040 Hb_022092_040 Hb_007545_110--Hb_022092_040 Hb_024973_020 Hb_024973_020 Hb_007545_110--Hb_024973_020 Hb_000032_200 Hb_000032_200 Hb_007545_110--Hb_000032_200 Hb_176472_020 Hb_176472_020 Hb_007545_110--Hb_176472_020 Hb_011485_030 Hb_011485_030 Hb_000181_270--Hb_011485_030 Hb_000181_270--Hb_004920_050 Hb_002518_200 Hb_002518_200 Hb_000181_270--Hb_002518_200 Hb_000529_040 Hb_000529_040 Hb_000181_270--Hb_000529_040 Hb_000890_020 Hb_000890_020 Hb_000181_270--Hb_000890_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.114259 0.691045 3.04458 1.09468 0.109035 0.0187663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.255042 0.109458 0 0.49365 0.115578

CAGE analysis