Hb_002078_250

Information

Type -
Description -
Location Contig2078: 183330-185904
Sequence    

Annotation

kegg
ID rcu:RCOM_0289600
description hypothetical protein
nr
ID XP_002533370.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T551
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0289600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21444: 184533-186523 , PASA_asmbl_21445: 185151-186520 , PASA_asmbl_21446: 185801-185999
cDNA
(Sanger)
(ID:Location)		 049_D10.ab1: 184533-186519 , 053_P12.ab1: 184586-186523

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000411_050 0.084698556 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
3 Hb_003656_170 0.0991381077 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
4 Hb_003964_010 0.0998427642 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
5 Hb_001123_170 0.1036093624 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004544_090 0.1119795078 - - cytochrome P450, putative [Ricinus communis]
7 Hb_003025_150 0.1133534198 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001776_100 0.120003771 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
9 Hb_002450_180 0.1203447569 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002324_050 0.1224989455 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
11 Hb_023386_050 0.1235556022 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000914_110 0.1237307113 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
13 Hb_001377_130 0.1247644329 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
14 Hb_000069_430 0.1260270763 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
15 Hb_164926_050 0.1283645722 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
16 Hb_000382_030 0.1322299683 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
17 Hb_000477_110 0.1334498844 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
18 Hb_005649_010 0.1354382908 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
19 Hb_006002_010 0.138420995 transcription factor TF Family: MYB Myb domain protein 5 isoform 1 [Theobroma cacao]
20 Hb_006634_090 0.13975511 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_250 Hb_002078_250 Hb_000411_050 Hb_000411_050 Hb_002078_250--Hb_000411_050 Hb_003656_170 Hb_003656_170 Hb_002078_250--Hb_003656_170 Hb_003964_010 Hb_003964_010 Hb_002078_250--Hb_003964_010 Hb_001123_170 Hb_001123_170 Hb_002078_250--Hb_001123_170 Hb_004544_090 Hb_004544_090 Hb_002078_250--Hb_004544_090 Hb_003025_150 Hb_003025_150 Hb_002078_250--Hb_003025_150 Hb_002450_180 Hb_002450_180 Hb_000411_050--Hb_002450_180 Hb_000847_050 Hb_000847_050 Hb_000411_050--Hb_000847_050 Hb_000411_050--Hb_004544_090 Hb_000454_200 Hb_000454_200 Hb_000411_050--Hb_000454_200 Hb_000679_260 Hb_000679_260 Hb_000411_050--Hb_000679_260 Hb_003656_170--Hb_001123_170 Hb_002324_050 Hb_002324_050 Hb_003656_170--Hb_002324_050 Hb_003656_170--Hb_003964_010 Hb_004306_140 Hb_004306_140 Hb_003656_170--Hb_004306_140 Hb_050236_010 Hb_050236_010 Hb_003656_170--Hb_050236_010 Hb_003964_010--Hb_002324_050 Hb_005649_010 Hb_005649_010 Hb_003964_010--Hb_005649_010 Hb_064985_010 Hb_064985_010 Hb_003964_010--Hb_064985_010 Hb_002343_020 Hb_002343_020 Hb_003964_010--Hb_002343_020 Hb_001377_130 Hb_001377_130 Hb_001123_170--Hb_001377_130 Hb_001123_170--Hb_004544_090 Hb_000382_030 Hb_000382_030 Hb_001123_170--Hb_000382_030 Hb_000477_110 Hb_000477_110 Hb_001123_170--Hb_000477_110 Hb_002276_100 Hb_002276_100 Hb_004544_090--Hb_002276_100 Hb_020285_010 Hb_020285_010 Hb_004544_090--Hb_020285_010 Hb_006002_010 Hb_006002_010 Hb_004544_090--Hb_006002_010 Hb_007894_030 Hb_007894_030 Hb_004544_090--Hb_007894_030 Hb_002324_040 Hb_002324_040 Hb_003025_150--Hb_002324_040 Hb_003579_040 Hb_003579_040 Hb_003025_150--Hb_003579_040 Hb_003025_150--Hb_002324_050 Hb_012727_010 Hb_012727_010 Hb_003025_150--Hb_012727_010 Hb_003025_150--Hb_003656_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.88164 360.218 266.483 315.887 27.0647 8.04945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.36104 3.74734 2.09268 234.016 119.476

CAGE analysis