Hb_002078_260

Information

Type -
Description -
Location Contig2078: 186039-186314
Sequence    

Annotation

kegg
ID pop:POPTR_0003s17150g
description POPTRDRAFT_817547; hypothetical protein
nr
ID ABK92612.1
description unknown [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9P8A9
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21444: 184533-186523 , PASA_asmbl_21445: 185151-186520
cDNA
(Sanger)
(ID:Location)		 049_D10.ab1: 184533-186519 , 053_P12.ab1: 184586-186523

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_260 0.0 - - unknown [Populus trichocarpa]
2 Hb_007894_230 0.0782811819 - - 30S ribosomal protein S14, putative [Ricinus communis]
3 Hb_030982_020 0.0919555006 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
4 Hb_005694_020 0.0981225686 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
5 Hb_132180_010 0.1010137713 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
6 Hb_082006_010 0.1011179449 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000340_520 0.1096829253 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
8 Hb_041205_010 0.1160746384 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011214_100 0.1178081395 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
10 Hb_000635_070 0.1190342859 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
11 Hb_011512_050 0.1190487904 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
12 Hb_080601_020 0.119346596 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
13 Hb_002562_110 0.1232334905 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
14 Hb_029142_070 0.1258089729 - - -
15 Hb_001163_040 0.1271547507 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
16 Hb_001220_010 0.1301825622 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
17 Hb_025288_010 0.1304133962 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
18 Hb_098852_010 0.1316923171 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
19 Hb_002259_160 0.1393660968 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
20 Hb_009270_030 0.13961364 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002078_260 Hb_002078_260 Hb_007894_230 Hb_007894_230 Hb_002078_260--Hb_007894_230 Hb_030982_020 Hb_030982_020 Hb_002078_260--Hb_030982_020 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_132180_010 Hb_132180_010 Hb_002078_260--Hb_132180_010 Hb_082006_010 Hb_082006_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_080601_020 Hb_080601_020 Hb_007894_230--Hb_080601_020 Hb_001935_150 Hb_001935_150 Hb_007894_230--Hb_001935_150 Hb_001571_110 Hb_001571_110 Hb_007894_230--Hb_001571_110 Hb_001220_010 Hb_001220_010 Hb_007894_230--Hb_001220_010 Hb_007894_230--Hb_005694_020 Hb_011214_100 Hb_011214_100 Hb_030982_020--Hb_011214_100 Hb_098852_010 Hb_098852_010 Hb_030982_020--Hb_098852_010 Hb_041205_010 Hb_041205_010 Hb_030982_020--Hb_041205_010 Hb_030982_020--Hb_132180_010 Hb_009270_030 Hb_009270_030 Hb_030982_020--Hb_009270_030 Hb_005694_020--Hb_082006_010 Hb_005694_020--Hb_041205_010 Hb_005694_020--Hb_132180_010 Hb_029142_070 Hb_029142_070 Hb_005694_020--Hb_029142_070 Hb_001233_020 Hb_001233_020 Hb_132180_010--Hb_001233_020 Hb_000671_120 Hb_000671_120 Hb_132180_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_132180_010--Hb_004669_030 Hb_000635_070 Hb_000635_070 Hb_132180_010--Hb_000635_070 Hb_132180_010--Hb_001220_010 Hb_082006_010--Hb_000635_070 Hb_002562_110 Hb_002562_110 Hb_082006_010--Hb_002562_110 Hb_082006_010--Hb_009270_030 Hb_129672_010 Hb_129672_010 Hb_082006_010--Hb_129672_010 Hb_082006_010--Hb_041205_010 Hb_000340_520--Hb_000635_070 Hb_000340_520--Hb_082006_010 Hb_000125_010 Hb_000125_010 Hb_000340_520--Hb_000125_010 Hb_000733_080 Hb_000733_080 Hb_000340_520--Hb_000733_080 Hb_000340_520--Hb_030982_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.7177 33.443 71.2004 844.361 74.5507 650.676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
384.165 631.804 336.062 254.587 177.153

CAGE analysis