Hb_002078_320

Information

Type -
Description -
Location Contig2078: 227676-228527
Sequence    

Annotation

kegg
ID rcu:RCOM_1079920
description hypothetical protein
nr
ID XP_012085686.1
description PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
swissprot
ID Q6NMK1
description Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1
trembl
ID A0A067K4S7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17967 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_320 0.0 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
2 Hb_003506_010 0.0603998512 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
3 Hb_004162_320 0.0694402009 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
4 Hb_000901_010 0.0703200673 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
5 Hb_000987_020 0.0729763098 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
6 Hb_000185_170 0.0763666045 - - ATP binding protein, putative [Ricinus communis]
7 Hb_020805_070 0.0864049863 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
8 Hb_004855_080 0.089732882 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
9 Hb_070136_010 0.0906655104 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
10 Hb_005892_040 0.0919295465 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
11 Hb_002601_140 0.0937521725 - - signal transducer, putative [Ricinus communis]
12 Hb_002635_020 0.093929581 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
13 Hb_000260_750 0.0982275256 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
14 Hb_001488_420 0.1015722504 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
15 Hb_000162_200 0.10304415 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
16 Hb_000694_050 0.1040583193 - - Nuclease PA3, putative [Ricinus communis]
17 Hb_001405_040 0.1063555835 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
18 Hb_000037_200 0.109943013 - - RNA binding protein, putative [Ricinus communis]
19 Hb_004946_010 0.1111947399 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
20 Hb_119066_010 0.1118255865 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_320 Hb_002078_320 Hb_003506_010 Hb_003506_010 Hb_002078_320--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_002078_320--Hb_004162_320 Hb_000901_010 Hb_000901_010 Hb_002078_320--Hb_000901_010 Hb_000987_020 Hb_000987_020 Hb_002078_320--Hb_000987_020 Hb_000185_170 Hb_000185_170 Hb_002078_320--Hb_000185_170 Hb_020805_070 Hb_020805_070 Hb_002078_320--Hb_020805_070 Hb_003506_010--Hb_004162_320 Hb_005892_040 Hb_005892_040 Hb_003506_010--Hb_005892_040 Hb_003506_010--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_003506_010--Hb_004855_080 Hb_000162_200 Hb_000162_200 Hb_003506_010--Hb_000162_200 Hb_004162_320--Hb_005892_040 Hb_004162_320--Hb_020805_070 Hb_004162_320--Hb_000162_200 Hb_001405_040 Hb_001405_040 Hb_004162_320--Hb_001405_040 Hb_000901_010--Hb_000987_020 Hb_004946_010 Hb_004946_010 Hb_000901_010--Hb_004946_010 Hb_000901_010--Hb_020805_070 Hb_000901_010--Hb_004855_080 Hb_000260_750 Hb_000260_750 Hb_000901_010--Hb_000260_750 Hb_001579_060 Hb_001579_060 Hb_000987_020--Hb_001579_060 Hb_000987_020--Hb_000185_170 Hb_000694_050 Hb_000694_050 Hb_000987_020--Hb_000694_050 Hb_000037_200 Hb_000037_200 Hb_000987_020--Hb_000037_200 Hb_070136_010 Hb_070136_010 Hb_000185_170--Hb_070136_010 Hb_000185_170--Hb_000037_200 Hb_001629_120 Hb_001629_120 Hb_000185_170--Hb_001629_120 Hb_000265_170 Hb_000265_170 Hb_000185_170--Hb_000265_170 Hb_020805_070--Hb_001405_040 Hb_020805_070--Hb_005892_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0270413 16.9891 51.5137 33.4399 0 0.0874442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.124256 0.146565 0 22.8319 44.8904

CAGE analysis