Hb_002078_390

Information

Type transcription factor
Description TF Family: SBP
Location Contig2078: 283965-288345
Sequence    

Annotation

kegg
ID rcu:RCOM_1079880
description LIGULELESS1 protein, putative
nr
ID XP_012085695.1
description PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
swissprot
ID Q9S840
description Squamosa promoter-binding-like protein 2 OS=Arabidopsis thaliana GN=SPL2 PE=2 SV=1
trembl
ID A0A067JVJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17971 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21463: 284135-284642 , PASA_asmbl_21464: 283968-287838 , PASA_asmbl_21465: 288103-288275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_390 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
2 Hb_005568_020 0.08363381 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
3 Hb_000465_020 0.0911439387 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
4 Hb_028008_040 0.0917752992 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000243_060 0.1035499426 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
6 Hb_000417_050 0.1061286018 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
7 Hb_002311_280 0.1132602329 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
8 Hb_003580_050 0.1150077506 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
9 Hb_001221_060 0.1182548426 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
10 Hb_003266_090 0.1210287844 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
11 Hb_000008_200 0.1220254927 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
12 Hb_022092_110 0.1248345866 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
13 Hb_000181_330 0.1251377818 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
14 Hb_000207_350 0.1252903236 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
15 Hb_001104_150 0.1280456085 - - PREDICTED: protein ROS1 [Jatropha curcas]
16 Hb_004218_200 0.1281787142 - - Ran GTPase binding protein, putative [Ricinus communis]
17 Hb_070498_010 0.1294704651 - - receptor kinase, putative [Ricinus communis]
18 Hb_001936_190 0.1299445004 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
19 Hb_006816_250 0.1323166235 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
20 Hb_128196_010 0.133572167 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002078_390 Hb_002078_390 Hb_005568_020 Hb_005568_020 Hb_002078_390--Hb_005568_020 Hb_000465_020 Hb_000465_020 Hb_002078_390--Hb_000465_020 Hb_028008_040 Hb_028008_040 Hb_002078_390--Hb_028008_040 Hb_000243_060 Hb_000243_060 Hb_002078_390--Hb_000243_060 Hb_000417_050 Hb_000417_050 Hb_002078_390--Hb_000417_050 Hb_002311_280 Hb_002311_280 Hb_002078_390--Hb_002311_280 Hb_000735_060 Hb_000735_060 Hb_005568_020--Hb_000735_060 Hb_003606_050 Hb_003606_050 Hb_005568_020--Hb_003606_050 Hb_000008_200 Hb_000008_200 Hb_005568_020--Hb_000008_200 Hb_128196_010 Hb_128196_010 Hb_005568_020--Hb_128196_010 Hb_000207_350 Hb_000207_350 Hb_005568_020--Hb_000207_350 Hb_001221_060 Hb_001221_060 Hb_000465_020--Hb_001221_060 Hb_000836_090 Hb_000836_090 Hb_000465_020--Hb_000836_090 Hb_033006_020 Hb_033006_020 Hb_000465_020--Hb_033006_020 Hb_000465_020--Hb_005568_020 Hb_000465_020--Hb_128196_010 Hb_003580_050 Hb_003580_050 Hb_028008_040--Hb_003580_050 Hb_004696_010 Hb_004696_010 Hb_028008_040--Hb_004696_010 Hb_001936_190 Hb_001936_190 Hb_028008_040--Hb_001936_190 Hb_012404_020 Hb_012404_020 Hb_028008_040--Hb_012404_020 Hb_005365_010 Hb_005365_010 Hb_028008_040--Hb_005365_010 Hb_000181_330 Hb_000181_330 Hb_000243_060--Hb_000181_330 Hb_010868_040 Hb_010868_040 Hb_000243_060--Hb_010868_040 Hb_000227_400 Hb_000227_400 Hb_000243_060--Hb_000227_400 Hb_010381_040 Hb_010381_040 Hb_000243_060--Hb_010381_040 Hb_000926_040 Hb_000926_040 Hb_000243_060--Hb_000926_040 Hb_004994_330 Hb_004994_330 Hb_000417_050--Hb_004994_330 Hb_002662_110 Hb_002662_110 Hb_000417_050--Hb_002662_110 Hb_001677_040 Hb_001677_040 Hb_000417_050--Hb_001677_040 Hb_000622_050 Hb_000622_050 Hb_000417_050--Hb_000622_050 Hb_001357_050 Hb_001357_050 Hb_000417_050--Hb_001357_050 Hb_007130_020 Hb_007130_020 Hb_002311_280--Hb_007130_020 Hb_022092_110 Hb_022092_110 Hb_002311_280--Hb_022092_110 Hb_003266_090 Hb_003266_090 Hb_002311_280--Hb_003266_090 Hb_002311_280--Hb_033006_020 Hb_044653_050 Hb_044653_050 Hb_002311_280--Hb_044653_050 Hb_002311_280--Hb_000181_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.716357 6.36041 22.6803 23.323 0.110557 1.17509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.20081 0.539948 0.0514958 3.2424 16.164

CAGE analysis