Hb_002078_420

Information

Type -
Description -
Location Contig2078: 308710-312594
Sequence    

Annotation

kegg
ID rcu:RCOM_1079860
description hypothetical protein
nr
ID XP_012085697.1
description PREDICTED: F-box only protein 6 [Jatropha curcas]
swissprot
ID Q9FZK1
description F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1
trembl
ID A0A067K3J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17973 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box only protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21466: 308685-312792
cDNA
(Sanger)
(ID:Location)		 001_I06.ab1: 308685-311984 , 008_G23.ab1: 308685-311790 , 046_P21.ab1: 308691-311935

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_420 0.0 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
2 Hb_000029_160 0.0894018097 - - Nitrilase, putative [Ricinus communis]
3 Hb_000172_550 0.0932474649 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
4 Hb_000016_280 0.0933514349 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
5 Hb_013753_010 0.0949194223 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
6 Hb_000331_480 0.0995686715 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
7 Hb_000076_290 0.0995967897 - - translation factor sui1, putative [Ricinus communis]
8 Hb_005038_020 0.0996459651 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_004032_350 0.1068675517 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
10 Hb_015763_020 0.1076639872 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
11 Hb_002725_070 0.1139245209 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
12 Hb_005295_040 0.114479521 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
13 Hb_027405_020 0.1155362458 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
14 Hb_002133_030 0.1155389032 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
15 Hb_002820_040 0.115665373 - - conserved hypothetical protein [Ricinus communis]
16 Hb_153547_010 0.1160884223 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
17 Hb_001009_050 0.1168621565 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
18 Hb_000174_200 0.1171975015 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
19 Hb_148209_020 0.1180669703 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
20 Hb_025048_040 0.1183278707 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_420 Hb_002078_420 Hb_000029_160 Hb_000029_160 Hb_002078_420--Hb_000029_160 Hb_000172_550 Hb_000172_550 Hb_002078_420--Hb_000172_550 Hb_000016_280 Hb_000016_280 Hb_002078_420--Hb_000016_280 Hb_013753_010 Hb_013753_010 Hb_002078_420--Hb_013753_010 Hb_000331_480 Hb_000331_480 Hb_002078_420--Hb_000331_480 Hb_000076_290 Hb_000076_290 Hb_002078_420--Hb_000076_290 Hb_002960_060 Hb_002960_060 Hb_000029_160--Hb_002960_060 Hb_000029_160--Hb_000172_550 Hb_001975_070 Hb_001975_070 Hb_000029_160--Hb_001975_070 Hb_027405_020 Hb_027405_020 Hb_000029_160--Hb_027405_020 Hb_000310_080 Hb_000310_080 Hb_000029_160--Hb_000310_080 Hb_000172_550--Hb_000076_290 Hb_004032_350 Hb_004032_350 Hb_000172_550--Hb_004032_350 Hb_002725_070 Hb_002725_070 Hb_000172_550--Hb_002725_070 Hb_002820_040 Hb_002820_040 Hb_000172_550--Hb_002820_040 Hb_005295_040 Hb_005295_040 Hb_000172_550--Hb_005295_040 Hb_000116_570 Hb_000116_570 Hb_000016_280--Hb_000116_570 Hb_101151_020 Hb_101151_020 Hb_000016_280--Hb_101151_020 Hb_001227_110 Hb_001227_110 Hb_000016_280--Hb_001227_110 Hb_000685_080 Hb_000685_080 Hb_000016_280--Hb_000685_080 Hb_003125_060 Hb_003125_060 Hb_000016_280--Hb_003125_060 Hb_010883_080 Hb_010883_080 Hb_000016_280--Hb_010883_080 Hb_000890_220 Hb_000890_220 Hb_013753_010--Hb_000890_220 Hb_013753_010--Hb_004032_350 Hb_012760_200 Hb_012760_200 Hb_013753_010--Hb_012760_200 Hb_013753_010--Hb_101151_020 Hb_013753_010--Hb_000331_480 Hb_025048_040 Hb_025048_040 Hb_013753_010--Hb_025048_040 Hb_001034_020 Hb_001034_020 Hb_000331_480--Hb_001034_020 Hb_000331_480--Hb_025048_040 Hb_002675_190 Hb_002675_190 Hb_000331_480--Hb_002675_190 Hb_000212_280 Hb_000212_280 Hb_000331_480--Hb_000212_280 Hb_000331_480--Hb_012760_200 Hb_153547_010 Hb_153547_010 Hb_000331_480--Hb_153547_010 Hb_000174_200 Hb_000174_200 Hb_000076_290--Hb_000174_200 Hb_000076_290--Hb_004032_350 Hb_000640_210 Hb_000640_210 Hb_000076_290--Hb_000640_210 Hb_001439_180 Hb_001439_180 Hb_000076_290--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_000076_290--Hb_015401_020 Hb_002270_010 Hb_002270_010 Hb_000076_290--Hb_002270_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
192.882 132.479 14.7411 16.1064 205.56 178.465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.9566 39.3518 44.9098 77.6704 12.2889

CAGE analysis