Hb_002078_430

Information

Type -
Description -
Location Contig2078: 313366-315194
Sequence    

Annotation

kegg
ID pmum:103322082
description stress-associated endoplasmic reticulum protein 2
nr
ID XP_007223937.1
description hypothetical protein PRUPE_ppa014280mg [Prunus persica]
swissprot
ID Q6TAW2
description Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus GN=Serp2 PE=3 SV=2
trembl
ID M5XI11
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014280mg PE=4 SV=1
Gene Ontology
ID GO:0005783
description stress-associated endoplasmic reticulum protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21468: 313547-315346
cDNA
(Sanger)
(ID:Location)		 001_J02.ab1: 313688-315339 , 005_E09.ab1: 313690-315308 , 007_M20.ab1: 313691-315312 , 008_D10.ab1: 313691-315307 , 010_B03.ab1: 313686-315346 , 011_P21.ab1: 313690-315308 , 013_N15.ab1: 313689-315299 , 016_N11.ab1: 313690-315306 , 018_O05.ab1: 313690-315307 , 020_L22.ab1: 313686-315308 , 020_P05.ab1: 313686-315339 , 031_A09.ab1: 313687-315307 , 032_M08.ab1: 313688-315339 , 036_H17.ab1: 313690-315313 , 036_N06.ab1: 313686-315346 , 044_M03.ab1: 313690-315339 , 050_M17.ab1: 313687-315328

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_430 0.0 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
2 Hb_000714_020 0.0996354143 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
3 Hb_000038_130 0.1138517826 - - -
4 Hb_011609_030 0.1163917844 - - conserved hypothetical protein 13 [Hevea brasiliensis]
5 Hb_004232_010 0.1185245575 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
6 Hb_005741_020 0.1218981563 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
7 Hb_003636_090 0.1219956394 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
8 Hb_001956_120 0.1232750629 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004374_010 0.1261337731 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
10 Hb_004254_040 0.1291868164 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
11 Hb_004070_030 0.1309091647 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000270_400 0.131272974 - - lipase, putative [Ricinus communis]
13 Hb_000997_260 0.1324354257 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
14 Hb_002619_010 0.1327554048 - - -
15 Hb_000590_090 0.1332124642 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
16 Hb_001623_370 0.133858015 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000085_340 0.1365613606 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
18 Hb_000416_100 0.1368266081 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
19 Hb_001493_100 0.1371361368 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
20 Hb_000172_610 0.1426346534 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_002078_430 Hb_002078_430 Hb_000714_020 Hb_000714_020 Hb_002078_430--Hb_000714_020 Hb_000038_130 Hb_000038_130 Hb_002078_430--Hb_000038_130 Hb_011609_030 Hb_011609_030 Hb_002078_430--Hb_011609_030 Hb_004232_010 Hb_004232_010 Hb_002078_430--Hb_004232_010 Hb_005741_020 Hb_005741_020 Hb_002078_430--Hb_005741_020 Hb_003636_090 Hb_003636_090 Hb_002078_430--Hb_003636_090 Hb_000714_020--Hb_011609_030 Hb_001623_370 Hb_001623_370 Hb_000714_020--Hb_001623_370 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_000714_020--Hb_004374_010 Hb_000038_130--Hb_000714_020 Hb_001635_220 Hb_001635_220 Hb_000038_130--Hb_001635_220 Hb_000117_040 Hb_000117_040 Hb_000038_130--Hb_000117_040 Hb_000590_090 Hb_000590_090 Hb_000038_130--Hb_000590_090 Hb_000038_130--Hb_004374_010 Hb_011609_030--Hb_004232_010 Hb_011609_030--Hb_001623_370 Hb_011609_030--Hb_005741_020 Hb_011930_010 Hb_011930_010 Hb_011609_030--Hb_011930_010 Hb_001956_120 Hb_001956_120 Hb_011609_030--Hb_001956_120 Hb_000500_290 Hb_000500_290 Hb_004232_010--Hb_000500_290 Hb_004232_010--Hb_005741_020 Hb_004232_010--Hb_000714_020 Hb_004070_030 Hb_004070_030 Hb_004232_010--Hb_004070_030 Hb_000282_150 Hb_000282_150 Hb_004232_010--Hb_000282_150 Hb_005271_070 Hb_005271_070 Hb_005741_020--Hb_005271_070 Hb_005741_020--Hb_001623_370 Hb_005741_020--Hb_000714_020 Hb_005741_020--Hb_001956_120 Hb_002875_090 Hb_002875_090 Hb_003636_090--Hb_002875_090 Hb_004738_090 Hb_004738_090 Hb_003636_090--Hb_004738_090 Hb_000085_340 Hb_000085_340 Hb_003636_090--Hb_000085_340 Hb_002067_160 Hb_002067_160 Hb_003636_090--Hb_002067_160 Hb_000997_260 Hb_000997_260 Hb_003636_090--Hb_000997_260 Hb_000270_400 Hb_000270_400 Hb_003636_090--Hb_000270_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
912.509 60.6837 62.0884 42.6346 409.279 595.794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
470.357 273.46 109.051 54.0303 10.4237

CAGE analysis