Hb_002078_440

Information

Type transcription factor
Description TF Family: Orphans
Location Contig2078: 331959-339227
Sequence    

Annotation

kegg
ID rcu:RCOM_1079740
description histidine kinase 1, 2, 3 plant, putative (EC:2.7.13.3)
nr
ID XP_012085699.1
description PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
swissprot
ID Q9C5U1
description Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1
trembl
ID A0A067JSG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17975 PE=4 SV=1
Gene Ontology
ID GO:0016020
description histidine kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21470: 331671-333250 , PASA_asmbl_21471: 333684-333887 , PASA_asmbl_21472: 333044-334601 , PASA_asmbl_21473: 335959-339228 , PASA_asmbl_21474: 336275-336424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_440 0.0 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
2 Hb_001102_210 0.1081665247 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
3 Hb_013405_140 0.1195637069 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
4 Hb_003783_030 0.1236982575 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
5 Hb_011021_040 0.1256295597 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
6 Hb_000340_310 0.1287888661 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
7 Hb_000140_360 0.1306957354 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
8 Hb_002239_060 0.1324845976 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
9 Hb_000111_450 0.1345380034 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
10 Hb_000748_130 0.1347640568 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
11 Hb_007037_020 0.1357056624 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
12 Hb_001481_140 0.1374115396 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
13 Hb_000673_020 0.138605982 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
14 Hb_001171_050 0.1397627598 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
15 Hb_001357_010 0.1401094174 - - -
16 Hb_003462_120 0.140125656 - - Acidic endochitinase [Theobroma cacao]
17 Hb_002026_120 0.1414582403 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
18 Hb_002284_200 0.1417482248 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
19 Hb_013399_050 0.1420402076 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
20 Hb_130719_010 0.1433245896 - - V-type proton ATPase subunit E [Hevea brasiliensis]

Gene co-expression network

sample Hb_002078_440 Hb_002078_440 Hb_001102_210 Hb_001102_210 Hb_002078_440--Hb_001102_210 Hb_013405_140 Hb_013405_140 Hb_002078_440--Hb_013405_140 Hb_003783_030 Hb_003783_030 Hb_002078_440--Hb_003783_030 Hb_011021_040 Hb_011021_040 Hb_002078_440--Hb_011021_040 Hb_000340_310 Hb_000340_310 Hb_002078_440--Hb_000340_310 Hb_000140_360 Hb_000140_360 Hb_002078_440--Hb_000140_360 Hb_001102_210--Hb_013405_140 Hb_001102_210--Hb_000140_360 Hb_000059_010 Hb_000059_010 Hb_001102_210--Hb_000059_010 Hb_001102_210--Hb_000340_310 Hb_000815_290 Hb_000815_290 Hb_001102_210--Hb_000815_290 Hb_002016_080 Hb_002016_080 Hb_013405_140--Hb_002016_080 Hb_011485_020 Hb_011485_020 Hb_013405_140--Hb_011485_020 Hb_000673_020 Hb_000673_020 Hb_013405_140--Hb_000673_020 Hb_007037_020 Hb_007037_020 Hb_013405_140--Hb_007037_020 Hb_013405_140--Hb_003783_030 Hb_013405_140--Hb_011021_040 Hb_003783_030--Hb_002016_080 Hb_003783_030--Hb_007037_020 Hb_003783_030--Hb_000673_020 Hb_001481_140 Hb_001481_140 Hb_003783_030--Hb_001481_140 Hb_003462_120 Hb_003462_120 Hb_003783_030--Hb_003462_120 Hb_011021_040--Hb_007037_020 Hb_013399_050 Hb_013399_050 Hb_011021_040--Hb_013399_050 Hb_000175_030 Hb_000175_030 Hb_011021_040--Hb_000175_030 Hb_011021_040--Hb_002016_080 Hb_001172_120 Hb_001172_120 Hb_011021_040--Hb_001172_120 Hb_000111_450 Hb_000111_450 Hb_000340_310--Hb_000111_450 Hb_003994_190 Hb_003994_190 Hb_000340_310--Hb_003994_190 Hb_001096_110 Hb_001096_110 Hb_000340_310--Hb_001096_110 Hb_000130_110 Hb_000130_110 Hb_000340_310--Hb_000130_110 Hb_000340_310--Hb_013405_140 Hb_002026_120 Hb_002026_120 Hb_000340_310--Hb_002026_120 Hb_000997_190 Hb_000997_190 Hb_000140_360--Hb_000997_190 Hb_000140_360--Hb_002026_120 Hb_117807_010 Hb_117807_010 Hb_000140_360--Hb_117807_010 Hb_000140_360--Hb_000815_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.9463 12.5018 10.6468 16.5789 3.69187 7.09561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.7431 46.5854 69.7113 21.753 22.6522

CAGE analysis