Hb_002078_450

Information

Type -
Description -
Location Contig2078: 341370-343753
Sequence    

Annotation

kegg
ID rcu:RCOM_1079720
description nuclear transport factor, putative
nr
ID XP_002514900.1
description nuclear transport factor, putative [Ricinus communis]
swissprot
ID Q9C7F5
description Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=1 SV=1
trembl
ID B9RMD1
description Nuclear transport factor, putative OS=Ricinus communis GN=RCOM_1079720 PE=4 SV=1
Gene Ontology
ID GO:0005622
description nuclear transport factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21475: 341383-343810 , PASA_asmbl_21476: 342277-342602
cDNA
(Sanger)
(ID:Location)		 035_O02.ab1: 341444-343669

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_450 0.0 - - nuclear transport factor, putative [Ricinus communis]
2 Hb_071736_020 0.047276904 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
3 Hb_005686_110 0.0558277918 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
4 Hb_000086_570 0.0587357179 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
5 Hb_009711_030 0.0597252438 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
6 Hb_001718_100 0.0604036701 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
7 Hb_022250_040 0.0607730358 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
8 Hb_021650_030 0.0621804264 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
9 Hb_000371_080 0.0651273908 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
10 Hb_001008_060 0.0659111662 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
11 Hb_001427_120 0.0683512348 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
12 Hb_003052_100 0.0718300545 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_004662_030 0.073509657 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
14 Hb_158092_070 0.0737714685 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
15 Hb_000975_290 0.0749068526 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
16 Hb_004657_020 0.0763352742 - - rer1 protein, putative [Ricinus communis]
17 Hb_000376_050 0.0765555335 - - polyadenylate-binding protein, putative [Ricinus communis]
18 Hb_001243_050 0.0775375741 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
19 Hb_001691_210 0.0778125775 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
20 Hb_007672_010 0.0785584219 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_450 Hb_002078_450 Hb_071736_020 Hb_071736_020 Hb_002078_450--Hb_071736_020 Hb_005686_110 Hb_005686_110 Hb_002078_450--Hb_005686_110 Hb_000086_570 Hb_000086_570 Hb_002078_450--Hb_000086_570 Hb_009711_030 Hb_009711_030 Hb_002078_450--Hb_009711_030 Hb_001718_100 Hb_001718_100 Hb_002078_450--Hb_001718_100 Hb_022250_040 Hb_022250_040 Hb_002078_450--Hb_022250_040 Hb_071736_020--Hb_001718_100 Hb_071736_020--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_071736_020--Hb_001427_120 Hb_000975_290 Hb_000975_290 Hb_071736_020--Hb_000975_290 Hb_021650_030 Hb_021650_030 Hb_071736_020--Hb_021650_030 Hb_000371_080 Hb_000371_080 Hb_005686_110--Hb_000371_080 Hb_005686_110--Hb_022250_040 Hb_001235_070 Hb_001235_070 Hb_005686_110--Hb_001235_070 Hb_001369_050 Hb_001369_050 Hb_005686_110--Hb_001369_050 Hb_005686_110--Hb_009711_030 Hb_000086_570--Hb_021650_030 Hb_000086_570--Hb_001427_120 Hb_000086_570--Hb_001718_100 Hb_002411_200 Hb_002411_200 Hb_000086_570--Hb_002411_200 Hb_009711_030--Hb_022250_040 Hb_125000_010 Hb_125000_010 Hb_009711_030--Hb_125000_010 Hb_009711_030--Hb_000371_080 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_001824_070 Hb_001824_070 Hb_009711_030--Hb_001824_070 Hb_002097_110 Hb_002097_110 Hb_009711_030--Hb_002097_110 Hb_001718_100--Hb_001427_120 Hb_000089_160 Hb_000089_160 Hb_001718_100--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_001718_100--Hb_001691_210 Hb_022250_040--Hb_000371_080 Hb_004662_030 Hb_004662_030 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_022250_040--Hb_125000_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
324.11 101.001 57.2561 145.483 256.466 410.737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
477.2 471.742 373.578 159.193 41.3304

CAGE analysis