Hb_002078_460

Information

Type -
Description -
Location Contig2078: 341490-343834
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID J3MUQ7
description Uncharacterized protein OS=Oryza brachyantha GN=OB08G28380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_460 0.0 - - -
2 Hb_001616_060 0.0675161771 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
3 Hb_002028_130 0.077923666 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
4 Hb_001278_050 0.082158497 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
5 Hb_007382_150 0.088435365 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
6 Hb_000865_070 0.0885338225 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
7 Hb_000032_220 0.0888263596 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
8 Hb_003929_120 0.0899428278 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
9 Hb_001862_100 0.0916564706 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
10 Hb_001329_210 0.091818641 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
11 Hb_001935_030 0.093344014 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000030_100 0.0946969357 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
13 Hb_003147_050 0.0950112098 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_000069_100 0.0954616619 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000363_200 0.0956005464 - - 40S ribosomal protein S8, putative [Ricinus communis]
16 Hb_000089_160 0.0962829445 - - 60S ribosomal protein L5B [Hevea brasiliensis]
17 Hb_003938_180 0.0970945605 - - lesion inducing family protein [Populus trichocarpa]
18 Hb_001762_060 0.0980288686 - - pantothenate kinase, putative [Ricinus communis]
19 Hb_008289_060 0.1010264441 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
20 Hb_001545_060 0.1032327963 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_460 Hb_002078_460 Hb_001616_060 Hb_001616_060 Hb_002078_460--Hb_001616_060 Hb_002028_130 Hb_002028_130 Hb_002078_460--Hb_002028_130 Hb_001278_050 Hb_001278_050 Hb_002078_460--Hb_001278_050 Hb_007382_150 Hb_007382_150 Hb_002078_460--Hb_007382_150 Hb_000865_070 Hb_000865_070 Hb_002078_460--Hb_000865_070 Hb_000032_220 Hb_000032_220 Hb_002078_460--Hb_000032_220 Hb_001575_020 Hb_001575_020 Hb_001616_060--Hb_001575_020 Hb_000069_100 Hb_000069_100 Hb_001616_060--Hb_000069_100 Hb_001616_060--Hb_007382_150 Hb_002097_060 Hb_002097_060 Hb_001616_060--Hb_002097_060 Hb_008289_060 Hb_008289_060 Hb_001616_060--Hb_008289_060 Hb_001718_100 Hb_001718_100 Hb_002028_130--Hb_001718_100 Hb_002716_070 Hb_002716_070 Hb_002028_130--Hb_002716_070 Hb_002028_130--Hb_001616_060 Hb_000030_100 Hb_000030_100 Hb_002028_130--Hb_000030_100 Hb_001862_100 Hb_001862_100 Hb_002028_130--Hb_001862_100 Hb_001329_210 Hb_001329_210 Hb_001278_050--Hb_001329_210 Hb_002936_050 Hb_002936_050 Hb_001278_050--Hb_002936_050 Hb_001278_050--Hb_000032_220 Hb_007666_020 Hb_007666_020 Hb_001278_050--Hb_007666_020 Hb_002897_060 Hb_002897_060 Hb_001278_050--Hb_002897_060 Hb_007382_150--Hb_002097_060 Hb_006573_220 Hb_006573_220 Hb_007382_150--Hb_006573_220 Hb_007382_150--Hb_000069_100 Hb_007943_090 Hb_007943_090 Hb_007382_150--Hb_007943_090 Hb_003376_030 Hb_003376_030 Hb_007382_150--Hb_003376_030 Hb_003226_280 Hb_003226_280 Hb_000865_070--Hb_003226_280 Hb_000089_160 Hb_000089_160 Hb_000865_070--Hb_000089_160 Hb_010560_040 Hb_010560_040 Hb_000865_070--Hb_010560_040 Hb_000865_070--Hb_000030_100 Hb_000363_200 Hb_000363_200 Hb_000865_070--Hb_000363_200 Hb_001396_220 Hb_001396_220 Hb_000032_220--Hb_001396_220 Hb_015934_020 Hb_015934_020 Hb_000032_220--Hb_015934_020 Hb_002387_060 Hb_002387_060 Hb_000032_220--Hb_002387_060 Hb_183963_020 Hb_183963_020 Hb_000032_220--Hb_183963_020 Hb_002352_010 Hb_002352_010 Hb_000032_220--Hb_002352_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
116.923 29.2415 13.9087 34.968 94.8342 141.565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
283.197 293.51 327.597 93.5388 28.4028

CAGE analysis