Hb_002078_470

Information

Type transcription factor
Description TF Family: CAMTA
Location Contig2078: 352784-361717
Sequence    

Annotation

kegg
ID pop:POPTR_0001s13700g
description calmodulin-binding family protein
nr
ID XP_012085704.1
description PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
swissprot
ID Q9FYG2
description Calmodulin-binding transcription activator 4 OS=Arabidopsis thaliana GN=CMTA4 PE=1 SV=1
trembl
ID A0A067K4T6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17982 PE=4 SV=1
Gene Ontology
ID GO:0005634
description calmodulin-binding transcription activator 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21477: 352875-361588
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_470 0.0 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
2 Hb_000428_030 0.0638138883 - - hypothetical protein RCOM_1520720 [Ricinus communis]
3 Hb_013358_060 0.0680392074 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
4 Hb_003124_270 0.0699721004 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
5 Hb_004551_020 0.0715625517 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
6 Hb_143629_020 0.07368171 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
7 Hb_004586_090 0.075486565 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
8 Hb_000844_050 0.0762523488 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
9 Hb_000404_030 0.0789782312 - - PREDICTED: protein NAP1 [Jatropha curcas]
10 Hb_000200_110 0.0835144161 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
11 Hb_003661_010 0.0874196266 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
12 Hb_012022_060 0.0875083304 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
13 Hb_007012_040 0.0882646655 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
14 Hb_003680_020 0.0893528972 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_006794_020 0.0896384263 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
16 Hb_000035_100 0.0896673595 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_014006_010 0.0896900476 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
18 Hb_008165_020 0.0896937037 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
19 Hb_160608_010 0.0899146969 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
20 Hb_000331_100 0.0921809492 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_470 Hb_002078_470 Hb_000428_030 Hb_000428_030 Hb_002078_470--Hb_000428_030 Hb_013358_060 Hb_013358_060 Hb_002078_470--Hb_013358_060 Hb_003124_270 Hb_003124_270 Hb_002078_470--Hb_003124_270 Hb_004551_020 Hb_004551_020 Hb_002078_470--Hb_004551_020 Hb_143629_020 Hb_143629_020 Hb_002078_470--Hb_143629_020 Hb_004586_090 Hb_004586_090 Hb_002078_470--Hb_004586_090 Hb_000260_760 Hb_000260_760 Hb_000428_030--Hb_000260_760 Hb_000331_100 Hb_000331_100 Hb_000428_030--Hb_000331_100 Hb_008165_020 Hb_008165_020 Hb_000428_030--Hb_008165_020 Hb_000428_030--Hb_004551_020 Hb_000200_110 Hb_000200_110 Hb_000428_030--Hb_000200_110 Hb_003725_010 Hb_003725_010 Hb_013358_060--Hb_003725_010 Hb_006794_020 Hb_006794_020 Hb_013358_060--Hb_006794_020 Hb_013358_060--Hb_000331_100 Hb_013358_060--Hb_000428_030 Hb_000035_100 Hb_000035_100 Hb_013358_060--Hb_000035_100 Hb_000844_050 Hb_000844_050 Hb_003124_270--Hb_000844_050 Hb_004884_090 Hb_004884_090 Hb_003124_270--Hb_004884_090 Hb_007012_040 Hb_007012_040 Hb_003124_270--Hb_007012_040 Hb_005181_050 Hb_005181_050 Hb_003124_270--Hb_005181_050 Hb_000809_250 Hb_000809_250 Hb_003124_270--Hb_000809_250 Hb_003680_020 Hb_003680_020 Hb_003124_270--Hb_003680_020 Hb_012490_010 Hb_012490_010 Hb_004551_020--Hb_012490_010 Hb_008686_020 Hb_008686_020 Hb_004551_020--Hb_008686_020 Hb_004551_020--Hb_007012_040 Hb_004551_020--Hb_000035_100 Hb_143629_020--Hb_004586_090 Hb_143629_020--Hb_006794_020 Hb_143629_020--Hb_000428_030 Hb_160608_010 Hb_160608_010 Hb_143629_020--Hb_160608_010 Hb_002809_160 Hb_002809_160 Hb_143629_020--Hb_002809_160 Hb_000243_400 Hb_000243_400 Hb_004586_090--Hb_000243_400 Hb_004586_090--Hb_003124_270 Hb_004586_090--Hb_005181_050 Hb_004586_090--Hb_000844_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.20088 16.8281 11.3046 7.76978 4.28412 5.56707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62921 3.20889 4.1954 10.4931 16.0242

CAGE analysis