Hb_002078_480

Information

Type -
Description -
Location Contig2078: 364908-365800
Sequence    

Annotation

kegg
ID cic:CICLE_v10033318mg
description hypothetical protein
nr
ID XP_006438002.1
description hypothetical protein CICLE_v10033318mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID A0A067GQ51
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040541mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description hypothetical protein CICLE_v10033318mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_480 0.0 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]
2 Hb_001053_150 0.1250906392 - - -
3 Hb_004429_070 0.1383336395 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
4 Hb_004324_050 0.1446372343 - - PREDICTED: spermine synthase [Jatropha curcas]
5 Hb_003117_010 0.1458052759 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
6 Hb_000963_140 0.1466428111 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_012423_050 0.1571084784 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
8 Hb_006472_050 0.1571338763 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
9 Hb_004056_030 0.1670561154 - - hypothetical protein 33 [Hevea brasiliensis]
10 Hb_001159_080 0.1696287257 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
11 Hb_003147_050 0.173199923 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_000141_030 0.1733573318 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
13 Hb_002756_020 0.1740372446 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
14 Hb_003096_030 0.1741476816 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
15 Hb_183961_010 0.1745921762 - - PREDICTED: inactive rhomboid protein 1 [Cucumis sativus]
16 Hb_002290_040 0.176238267 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001427_230 0.177192999 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000260_210 0.1809326772 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011457_090 0.1810274896 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
20 Hb_000224_120 0.1820692223 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]

Gene co-expression network

sample Hb_002078_480 Hb_002078_480 Hb_001053_150 Hb_001053_150 Hb_002078_480--Hb_001053_150 Hb_004429_070 Hb_004429_070 Hb_002078_480--Hb_004429_070 Hb_004324_050 Hb_004324_050 Hb_002078_480--Hb_004324_050 Hb_003117_010 Hb_003117_010 Hb_002078_480--Hb_003117_010 Hb_000963_140 Hb_000963_140 Hb_002078_480--Hb_000963_140 Hb_012423_050 Hb_012423_050 Hb_002078_480--Hb_012423_050 Hb_001035_070 Hb_001035_070 Hb_001053_150--Hb_001035_070 Hb_001053_150--Hb_004429_070 Hb_000010_410 Hb_000010_410 Hb_001053_150--Hb_000010_410 Hb_001053_150--Hb_000963_140 Hb_006472_050 Hb_006472_050 Hb_001053_150--Hb_006472_050 Hb_002756_020 Hb_002756_020 Hb_004429_070--Hb_002756_020 Hb_002290_040 Hb_002290_040 Hb_004429_070--Hb_002290_040 Hb_011360_080 Hb_011360_080 Hb_004429_070--Hb_011360_080 Hb_004429_070--Hb_004324_050 Hb_000327_220 Hb_000327_220 Hb_004429_070--Hb_000327_220 Hb_000141_030 Hb_000141_030 Hb_004429_070--Hb_000141_030 Hb_004324_050--Hb_002290_040 Hb_000103_110 Hb_000103_110 Hb_004324_050--Hb_000103_110 Hb_000368_060 Hb_000368_060 Hb_004324_050--Hb_000368_060 Hb_004324_050--Hb_012423_050 Hb_001762_060 Hb_001762_060 Hb_004324_050--Hb_001762_060 Hb_027751_060 Hb_027751_060 Hb_003117_010--Hb_027751_060 Hb_003294_100 Hb_003294_100 Hb_003117_010--Hb_003294_100 Hb_013893_010 Hb_013893_010 Hb_003117_010--Hb_013893_010 Hb_092107_010 Hb_092107_010 Hb_003117_010--Hb_092107_010 Hb_001294_010 Hb_001294_010 Hb_003117_010--Hb_001294_010 Hb_000099_130 Hb_000099_130 Hb_000963_140--Hb_000099_130 Hb_000963_140--Hb_000141_030 Hb_001159_080 Hb_001159_080 Hb_000963_140--Hb_001159_080 Hb_000836_130 Hb_000836_130 Hb_000963_140--Hb_000836_130 Hb_001135_210 Hb_001135_210 Hb_000963_140--Hb_001135_210 Hb_003581_260 Hb_003581_260 Hb_000963_140--Hb_003581_260 Hb_001006_180 Hb_001006_180 Hb_012423_050--Hb_001006_180 Hb_012423_050--Hb_001762_060 Hb_001427_230 Hb_001427_230 Hb_012423_050--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_012423_050--Hb_000398_160 Hb_009265_060 Hb_009265_060 Hb_012423_050--Hb_009265_060 Hb_000032_040 Hb_000032_040 Hb_012423_050--Hb_000032_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25362 0.284859 0.114529 2.99808 0.680726 3.27667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.64046 5.22545 14.089 2.52187 1.65809

CAGE analysis