Hb_002078_500

Information

Type -
Description -
Location Contig2078: 367306-367515
Sequence    

Annotation

kegg
ID rcu:RCOM_1079680
description hypothetical protein
nr
ID XP_002514896.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMC7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21478: 367269-367630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_500 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002079_040 0.1470315753 - - hypothetical protein VITISV_018542 [Vitis vinifera]
3 Hb_003030_040 0.1652141961 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
4 Hb_011037_020 0.1668654915 - - unknown [Picea sitchensis]
5 Hb_002815_050 0.1712552034 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
6 Hb_026228_010 0.180328775 - - conserved hypothetical protein [Ricinus communis]
7 Hb_108227_010 0.1865898676 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
8 Hb_005107_020 0.1911832999 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
9 Hb_005679_070 0.1913481113 - - hypothetical protein M569_07741, partial [Genlisea aurea]
10 Hb_012675_080 0.1921852114 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
11 Hb_007763_050 0.1993391832 - - hypothetical protein L484_012752 [Morus notabilis]
12 Hb_003656_150 0.1996957902 - - -
13 Hb_003688_110 0.1998177862 - - -
14 Hb_002168_010 0.2006644175 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
15 Hb_031866_050 0.201598854 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
16 Hb_004466_060 0.2023577496 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
17 Hb_000317_140 0.2075735441 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
18 Hb_000015_070 0.2076162155 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
19 Hb_010931_140 0.2088972527 - - -
20 Hb_000034_090 0.209700894 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]

Gene co-expression network

sample Hb_002078_500 Hb_002078_500 Hb_002079_040 Hb_002079_040 Hb_002078_500--Hb_002079_040 Hb_003030_040 Hb_003030_040 Hb_002078_500--Hb_003030_040 Hb_011037_020 Hb_011037_020 Hb_002078_500--Hb_011037_020 Hb_002815_050 Hb_002815_050 Hb_002078_500--Hb_002815_050 Hb_026228_010 Hb_026228_010 Hb_002078_500--Hb_026228_010 Hb_108227_010 Hb_108227_010 Hb_002078_500--Hb_108227_010 Hb_000034_090 Hb_000034_090 Hb_002079_040--Hb_000034_090 Hb_002079_040--Hb_003030_040 Hb_013394_100 Hb_013394_100 Hb_002079_040--Hb_013394_100 Hb_012675_080 Hb_012675_080 Hb_002079_040--Hb_012675_080 Hb_005107_020 Hb_005107_020 Hb_002079_040--Hb_005107_020 Hb_003030_040--Hb_002815_050 Hb_031866_050 Hb_031866_050 Hb_003030_040--Hb_031866_050 Hb_007188_030 Hb_007188_030 Hb_003030_040--Hb_007188_030 Hb_003656_150 Hb_003656_150 Hb_003030_040--Hb_003656_150 Hb_003030_040--Hb_005107_020 Hb_005679_070 Hb_005679_070 Hb_003030_040--Hb_005679_070 Hb_025288_010 Hb_025288_010 Hb_011037_020--Hb_025288_010 Hb_000671_120 Hb_000671_120 Hb_011037_020--Hb_000671_120 Hb_011214_100 Hb_011214_100 Hb_011037_020--Hb_011214_100 Hb_011037_020--Hb_012675_080 Hb_000125_020 Hb_000125_020 Hb_011037_020--Hb_000125_020 Hb_011512_050 Hb_011512_050 Hb_011037_020--Hb_011512_050 Hb_002815_050--Hb_005679_070 Hb_002815_050--Hb_007188_030 Hb_002815_050--Hb_003656_150 Hb_022891_010 Hb_022891_010 Hb_002815_050--Hb_022891_010 Hb_068014_010 Hb_068014_010 Hb_002815_050--Hb_068014_010 Hb_000329_560 Hb_000329_560 Hb_026228_010--Hb_000329_560 Hb_026228_010--Hb_005679_070 Hb_001998_140 Hb_001998_140 Hb_026228_010--Hb_001998_140 Hb_003688_110 Hb_003688_110 Hb_026228_010--Hb_003688_110 Hb_002200_050 Hb_002200_050 Hb_026228_010--Hb_002200_050 Hb_000810_020 Hb_000810_020 Hb_026228_010--Hb_000810_020 Hb_000015_070 Hb_000015_070 Hb_108227_010--Hb_000015_070 Hb_003371_170 Hb_003371_170 Hb_108227_010--Hb_003371_170 Hb_001396_250 Hb_001396_250 Hb_108227_010--Hb_001396_250 Hb_108227_010--Hb_012675_080 Hb_000789_150 Hb_000789_150 Hb_108227_010--Hb_000789_150 Hb_108227_010--Hb_013394_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
153.231 77.0825 45.2939 2167.6 114.711 1939.4
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
589.573 330.114 297.998 87.5662 579.44

CAGE analysis