Hb_002079_050

Information

Type -
Description -
Location Contig2079: 41360-42345
Sequence    

Annotation

kegg
ID cam:101495635
description uncharacterized LOC101495635
nr
ID KJB25239.1
description hypothetical protein B456_004G182300 [Gossypium raimondii]
swissprot
ID Q05892
description Uncharacterized protein YLR290C, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR290C PE=1 SV=1
trembl
ID A0A0D2QZV6
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G182300 PE=4 SV=1
Gene Ontology
ID GO:0006950
description nad -binding rossmann-fold superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21481: 11275-42437
cDNA
(Sanger)
(ID:Location)		 005_N13.ab1: 11782-42400 , 012_L17.ab1: 12491-42437 , 043_P09.ab1: 12507-42398

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002079_050 0.0 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
2 Hb_142328_010 0.0903939754 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
3 Hb_002200_040 0.1106406315 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
4 Hb_002079_030 0.1228216949 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
5 Hb_150023_010 0.1385327201 - - 50S ribosomal protein L2, putative [Ricinus communis]
6 Hb_006810_030 0.1456049104 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_026745_020 0.1530011801 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
8 Hb_000122_070 0.1530965241 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
9 Hb_000004_020 0.1547302517 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006274_040 0.1588247301 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
11 Hb_000333_080 0.1592011174 - - PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
12 Hb_004531_140 0.160189317 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
13 Hb_001799_200 0.1603498604 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
14 Hb_000327_110 0.1605619822 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
15 Hb_004303_040 0.1606057653 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
16 Hb_054745_010 0.1616424323 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004157_100 0.1620360674 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
18 Hb_001898_210 0.1634972218 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
19 Hb_004117_160 0.1660178628 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]
20 Hb_069662_010 0.1674404262 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]

Gene co-expression network

sample Hb_002079_050 Hb_002079_050 Hb_142328_010 Hb_142328_010 Hb_002079_050--Hb_142328_010 Hb_002200_040 Hb_002200_040 Hb_002079_050--Hb_002200_040 Hb_002079_030 Hb_002079_030 Hb_002079_050--Hb_002079_030 Hb_150023_010 Hb_150023_010 Hb_002079_050--Hb_150023_010 Hb_006810_030 Hb_006810_030 Hb_002079_050--Hb_006810_030 Hb_026745_020 Hb_026745_020 Hb_002079_050--Hb_026745_020 Hb_142328_010--Hb_002079_030 Hb_142328_010--Hb_006810_030 Hb_012194_050 Hb_012194_050 Hb_142328_010--Hb_012194_050 Hb_001898_210 Hb_001898_210 Hb_142328_010--Hb_001898_210 Hb_152202_010 Hb_152202_010 Hb_142328_010--Hb_152202_010 Hb_000210_240 Hb_000210_240 Hb_002200_040--Hb_000210_240 Hb_006274_040 Hb_006274_040 Hb_002200_040--Hb_006274_040 Hb_003606_060 Hb_003606_060 Hb_002200_040--Hb_003606_060 Hb_004303_040 Hb_004303_040 Hb_002200_040--Hb_004303_040 Hb_008447_030 Hb_008447_030 Hb_002200_040--Hb_008447_030 Hb_001828_040 Hb_001828_040 Hb_002079_030--Hb_001828_040 Hb_069662_010 Hb_069662_010 Hb_002079_030--Hb_069662_010 Hb_011486_040 Hb_011486_040 Hb_002079_030--Hb_011486_040 Hb_000333_080 Hb_000333_080 Hb_002079_030--Hb_000333_080 Hb_004531_140 Hb_004531_140 Hb_002079_030--Hb_004531_140 Hb_005527_020 Hb_005527_020 Hb_150023_010--Hb_005527_020 Hb_004117_160 Hb_004117_160 Hb_150023_010--Hb_004117_160 Hb_000991_070 Hb_000991_070 Hb_150023_010--Hb_000991_070 Hb_000107_200 Hb_000107_200 Hb_150023_010--Hb_000107_200 Hb_000825_030 Hb_000825_030 Hb_150023_010--Hb_000825_030 Hb_000056_130 Hb_000056_130 Hb_006810_030--Hb_000056_130 Hb_001191_110 Hb_001191_110 Hb_006810_030--Hb_001191_110 Hb_001491_030 Hb_001491_030 Hb_006810_030--Hb_001491_030 Hb_000136_140 Hb_000136_140 Hb_006810_030--Hb_000136_140 Hb_000184_070 Hb_000184_070 Hb_006810_030--Hb_000184_070 Hb_000071_150 Hb_000071_150 Hb_006810_030--Hb_000071_150 Hb_005701_060 Hb_005701_060 Hb_026745_020--Hb_005701_060 Hb_004060_030 Hb_004060_030 Hb_026745_020--Hb_004060_030 Hb_026745_020--Hb_004303_040 Hb_000193_270 Hb_000193_270 Hb_026745_020--Hb_000193_270 Hb_162603_010 Hb_162603_010 Hb_026745_020--Hb_162603_010 Hb_025194_100 Hb_025194_100 Hb_026745_020--Hb_025194_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7573 10.4307 35.8673 90.002 25.049 99.9134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.2199 36.279 23.0274 15.8256 69.6075

CAGE analysis