Hb_002079_100

Information

Type transcription factor
Description TF Family: HB
Location Contig2079: 139140-143682
Sequence    

Annotation

kegg
ID rcu:RCOM_1315300
description homeobox protein, putative
nr
ID XP_012081064.1
description PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
swissprot
ID Q9FJS2
description Homeobox-leucine zipper protein HDG5 OS=Arabidopsis thaliana GN=HDG5 PE=2 SV=3
trembl
ID B9RZ07
description Homeobox protein, putative OS=Ricinus communis GN=RCOM_1315300 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein hdg5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21486: 138781-144180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002079_100 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
2 Hb_000505_030 0.0535666808 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002447_060 0.0693833431 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
4 Hb_007558_060 0.0833744006 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
5 Hb_000731_030 0.0879965309 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
6 Hb_012633_010 0.0889367599 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
7 Hb_000816_080 0.0898474559 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
8 Hb_001519_080 0.0962948427 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
9 Hb_001040_050 0.1004204261 - - Stem-specific protein TSJT1, putative [Ricinus communis]
10 Hb_008642_020 0.1053036746 - - sterol desaturase, putative [Ricinus communis]
11 Hb_006519_020 0.1088484597 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_001680_060 0.1130786844 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004007_080 0.1150077748 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]
14 Hb_052530_010 0.1151260571 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
15 Hb_007681_020 0.1157389319 - - transferase, putative [Ricinus communis]
16 Hb_000563_110 0.1175305494 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
17 Hb_011218_020 0.1179210828 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000152_200 0.1186649077 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
19 Hb_088118_010 0.1187870882 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
20 Hb_001153_230 0.1198226421 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]

Gene co-expression network

sample Hb_002079_100 Hb_002079_100 Hb_000505_030 Hb_000505_030 Hb_002079_100--Hb_000505_030 Hb_002447_060 Hb_002447_060 Hb_002079_100--Hb_002447_060 Hb_007558_060 Hb_007558_060 Hb_002079_100--Hb_007558_060 Hb_000731_030 Hb_000731_030 Hb_002079_100--Hb_000731_030 Hb_012633_010 Hb_012633_010 Hb_002079_100--Hb_012633_010 Hb_000816_080 Hb_000816_080 Hb_002079_100--Hb_000816_080 Hb_000505_030--Hb_000731_030 Hb_000505_030--Hb_007558_060 Hb_000152_200 Hb_000152_200 Hb_000505_030--Hb_000152_200 Hb_001680_060 Hb_001680_060 Hb_000505_030--Hb_001680_060 Hb_001519_080 Hb_001519_080 Hb_000505_030--Hb_001519_080 Hb_002447_060--Hb_012633_010 Hb_001040_050 Hb_001040_050 Hb_002447_060--Hb_001040_050 Hb_000157_060 Hb_000157_060 Hb_002447_060--Hb_000157_060 Hb_028187_010 Hb_028187_010 Hb_002447_060--Hb_028187_010 Hb_002447_060--Hb_000505_030 Hb_008642_020 Hb_008642_020 Hb_007558_060--Hb_008642_020 Hb_000563_110 Hb_000563_110 Hb_007558_060--Hb_000563_110 Hb_007558_060--Hb_001519_080 Hb_000005_390 Hb_000005_390 Hb_007558_060--Hb_000005_390 Hb_005170_050 Hb_005170_050 Hb_007558_060--Hb_005170_050 Hb_005550_060 Hb_005550_060 Hb_007558_060--Hb_005550_060 Hb_000731_030--Hb_000152_200 Hb_006909_050 Hb_006909_050 Hb_000731_030--Hb_006909_050 Hb_000731_030--Hb_001519_080 Hb_000731_030--Hb_007558_060 Hb_006519_020 Hb_006519_020 Hb_012633_010--Hb_006519_020 Hb_012633_010--Hb_001040_050 Hb_012633_010--Hb_000505_030 Hb_163140_010 Hb_163140_010 Hb_012633_010--Hb_163140_010 Hb_088118_010 Hb_088118_010 Hb_000816_080--Hb_088118_010 Hb_052530_010 Hb_052530_010 Hb_000816_080--Hb_052530_010 Hb_003226_040 Hb_003226_040 Hb_000816_080--Hb_003226_040 Hb_004007_080 Hb_004007_080 Hb_000816_080--Hb_004007_080 Hb_000816_080--Hb_007558_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.516956 16.1699 1.70295 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0339415 0.665718

CAGE analysis