Hb_002081_030

Information

Type -
Description -
Location Contig2081: 34331-36202
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012904mg
description hypothetical protein
nr
ID CDO97289.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q8S8M0
description Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thaliana GN=At2g41420 PE=3 SV=1
trembl
ID A0A068TMW8
description Coffea canephora DH200=94 genomic scaffold, scaffold_1 OS=Coffea canephora GN=GSCOC_T00014573001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21547: 34137-36246 , PASA_asmbl_21549: 35590-36174
cDNA
(Sanger)
(ID:Location)		 001_M09.ab1: 34321-36175 , 006_I07.ab1: 34338-36124 , 006_J10.ab1: 34338-36174 , 008_O23.ab1: 34335-36133 , 019_I14.ab1: 34319-36174 , 021_L07.ab1: 34318-36174 , 027_L15.ab1: 34335-36047 , 032_D12.ab1: 34335-36174 , 035_F05.ab1: 34324-36174 , 038_L06.ab1: 34321-36174 , 044_M20.ab1: 34335-36246

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_030 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000087_130 0.0920957573 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
3 Hb_001726_040 0.0925499383 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]
4 Hb_000948_220 0.0958127319 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
5 Hb_000809_060 0.0968975829 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
6 Hb_027472_160 0.1038987547 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
7 Hb_009778_040 0.1045474021 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
8 Hb_000768_130 0.1125174231 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
9 Hb_120823_010 0.116475638 - - -
10 Hb_000069_700 0.1177723356 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
11 Hb_002838_030 0.1183428193 - - 40S ribosomal protein S25A [Hevea brasiliensis]
12 Hb_001155_040 0.1192593227 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
13 Hb_003020_330 0.1192962984 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
14 Hb_000915_120 0.1193280086 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
15 Hb_000317_070 0.1209081206 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
16 Hb_000111_100 0.1212746292 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
17 Hb_000215_330 0.1257166605 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
18 Hb_000110_170 0.1264192333 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000030_200 0.1265888743 - - PREDICTED: early nodulin-93-like [Populus euphratica]
20 Hb_000062_390 0.127979517 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002081_030 Hb_002081_030 Hb_000087_130 Hb_000087_130 Hb_002081_030--Hb_000087_130 Hb_001726_040 Hb_001726_040 Hb_002081_030--Hb_001726_040 Hb_000948_220 Hb_000948_220 Hb_002081_030--Hb_000948_220 Hb_000809_060 Hb_000809_060 Hb_002081_030--Hb_000809_060 Hb_027472_160 Hb_027472_160 Hb_002081_030--Hb_027472_160 Hb_009778_040 Hb_009778_040 Hb_002081_030--Hb_009778_040 Hb_001155_040 Hb_001155_040 Hb_000087_130--Hb_001155_040 Hb_072922_020 Hb_072922_020 Hb_000087_130--Hb_072922_020 Hb_006915_040 Hb_006915_040 Hb_000087_130--Hb_006915_040 Hb_000087_130--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_000087_130--Hb_000030_200 Hb_000384_120 Hb_000384_120 Hb_000087_130--Hb_000384_120 Hb_000069_700 Hb_000069_700 Hb_001726_040--Hb_000069_700 Hb_004057_010 Hb_004057_010 Hb_001726_040--Hb_004057_010 Hb_001726_040--Hb_000087_130 Hb_000189_240 Hb_000189_240 Hb_001726_040--Hb_000189_240 Hb_000735_040 Hb_000735_040 Hb_001726_040--Hb_000735_040 Hb_007120_090 Hb_007120_090 Hb_000948_220--Hb_007120_090 Hb_002838_030 Hb_002838_030 Hb_000948_220--Hb_002838_030 Hb_000948_220--Hb_001155_040 Hb_000317_070 Hb_000317_070 Hb_000948_220--Hb_000317_070 Hb_174865_010 Hb_174865_010 Hb_000948_220--Hb_174865_010 Hb_000809_060--Hb_009778_040 Hb_007885_010 Hb_007885_010 Hb_000809_060--Hb_007885_010 Hb_004755_030 Hb_004755_030 Hb_000809_060--Hb_004755_030 Hb_005144_070 Hb_005144_070 Hb_000809_060--Hb_005144_070 Hb_076693_040 Hb_076693_040 Hb_000809_060--Hb_076693_040 Hb_002811_090 Hb_002811_090 Hb_027472_160--Hb_002811_090 Hb_003020_330 Hb_003020_330 Hb_027472_160--Hb_003020_330 Hb_000645_140 Hb_000645_140 Hb_027472_160--Hb_000645_140 Hb_000915_120 Hb_000915_120 Hb_027472_160--Hb_000915_120 Hb_027472_160--Hb_000948_220 Hb_027472_160--Hb_007120_090 Hb_009778_040--Hb_002838_030 Hb_001105_090 Hb_001105_090 Hb_009778_040--Hb_001105_090 Hb_009778_040--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_009778_040--Hb_006588_080 Hb_120823_010 Hb_120823_010 Hb_009778_040--Hb_120823_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
107.644 61.2077 182.168 268.99 42.896 82.6085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
430.931 813.034 273.341 77.4593 107.283

CAGE analysis