Hb_002081_060

Information

Type -
Description -
Location Contig2081: 132901-134851
Sequence    

Annotation

kegg
ID rcu:RCOM_0811920
description cyclin d, putative
nr
ID XP_002518702.1
description cyclin d, putative [Ricinus communis]
swissprot
ID P42753
description Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3
trembl
ID B9RYB8
description Cyclin d, putative OS=Ricinus communis GN=RCOM_0811920 PE=3 SV=1
Gene Ontology
ID GO:0005634
description d3-type cyclin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21551: 132899-134778
cDNA
(Sanger)
(ID:Location)		 018_N03.ab1: 134381-134778

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_060 0.0 - - cyclin d, putative [Ricinus communis]
2 Hb_000205_180 0.1015185588 - - lipoxygenase, putative [Ricinus communis]
3 Hb_001310_060 0.1082020208 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_001999_160 0.1106421826 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
5 Hb_001369_550 0.1121035063 - - 21 kDa protein precursor, putative [Ricinus communis]
6 Hb_004607_020 0.1121503614 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
7 Hb_003626_020 0.1157494683 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
8 Hb_000077_300 0.1163899798 - - PREDICTED: expansin-B3-like [Jatropha curcas]
9 Hb_000343_010 0.1167767759 - - F3F9.11 [Arabidopsis thaliana]
10 Hb_002757_010 0.117349368 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
11 Hb_002700_030 0.1177386563 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
12 Hb_000343_020 0.1187164791 - - PREDICTED: putative Peroxidase 48 [Jatropha curcas]
13 Hb_033041_010 0.1219147824 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
14 Hb_000954_040 0.1221832401 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
15 Hb_001934_040 0.125024286 - - PREDICTED: vacuolar iron transporter 1-like [Jatropha curcas]
16 Hb_000664_080 0.1255024484 - - PREDICTED: NADP-dependent malic enzyme isoform X2 [Jatropha curcas]
17 Hb_005542_150 0.1273670295 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
18 Hb_080147_070 0.1287116654 - - Rop5 [Hevea brasiliensis]
19 Hb_020273_010 0.1314994037 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
20 Hb_003777_260 0.133464861 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_002081_060 Hb_002081_060 Hb_000205_180 Hb_000205_180 Hb_002081_060--Hb_000205_180 Hb_001310_060 Hb_001310_060 Hb_002081_060--Hb_001310_060 Hb_001999_160 Hb_001999_160 Hb_002081_060--Hb_001999_160 Hb_001369_550 Hb_001369_550 Hb_002081_060--Hb_001369_550 Hb_004607_020 Hb_004607_020 Hb_002081_060--Hb_004607_020 Hb_003626_020 Hb_003626_020 Hb_002081_060--Hb_003626_020 Hb_000205_180--Hb_003626_020 Hb_000205_180--Hb_001369_550 Hb_000205_180--Hb_001310_060 Hb_001284_070 Hb_001284_070 Hb_000205_180--Hb_001284_070 Hb_002757_010 Hb_002757_010 Hb_000205_180--Hb_002757_010 Hb_002700_030 Hb_002700_030 Hb_000205_180--Hb_002700_030 Hb_001310_060--Hb_001284_070 Hb_080147_070 Hb_080147_070 Hb_001310_060--Hb_080147_070 Hb_001310_060--Hb_004607_020 Hb_001310_060--Hb_002700_030 Hb_000077_300 Hb_000077_300 Hb_001310_060--Hb_000077_300 Hb_005542_150 Hb_005542_150 Hb_001999_160--Hb_005542_150 Hb_000954_040 Hb_000954_040 Hb_001999_160--Hb_000954_040 Hb_000260_670 Hb_000260_670 Hb_001999_160--Hb_000260_670 Hb_001999_160--Hb_002700_030 Hb_003228_050 Hb_003228_050 Hb_001999_160--Hb_003228_050 Hb_001369_550--Hb_080147_070 Hb_006316_090 Hb_006316_090 Hb_001369_550--Hb_006316_090 Hb_001369_550--Hb_000260_670 Hb_001369_550--Hb_002700_030 Hb_001369_550--Hb_001284_070 Hb_004607_020--Hb_001284_070 Hb_004607_020--Hb_080147_070 Hb_004607_020--Hb_003626_020 Hb_004607_020--Hb_002700_030 Hb_004607_020--Hb_001369_550 Hb_003992_130 Hb_003992_130 Hb_003626_020--Hb_003992_130 Hb_000035_150 Hb_000035_150 Hb_003626_020--Hb_000035_150 Hb_027337_010 Hb_027337_010 Hb_003626_020--Hb_027337_010 Hb_003626_020--Hb_001310_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.377893 0.486298 16.9428 5.80863 0.0985552 0.0125981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.115765 0.0227695 0 3.28724 3.10455

CAGE analysis