Hb_002081_110

Information

Type -
Description -
Location Contig2081: 204217-205043
Sequence    

Annotation

kegg
ID pop:POPTR_0001s29950g
description POPTRDRAFT_753079; hypothetical protein
nr
ID XP_011030316.1
description PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067L7T0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16354 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21558: 203821-204074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_110 0.0 - - PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
2 Hb_001031_130 9.1221e-05 - - zinc finger protein, putative [Ricinus communis]
3 Hb_171420_010 0.0025379791 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
4 Hb_000042_410 0.003445382 - - Patatin precursor, putative [Ricinus communis]
5 Hb_014549_030 0.0039652972 - - receptor-kinase, putative [Ricinus communis]
6 Hb_000185_190 0.0040722076 - - hypothetical protein L484_017526 [Morus notabilis]
7 Hb_004994_270 0.0047965927 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
8 Hb_015754_010 0.0056041147 - - Galactose oxidase precursor, putative [Ricinus communis]
9 Hb_001579_080 0.0076272367 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_000771_010 0.0115601042 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_002986_150 0.0141567481 - - hypothetical protein glysoja_022060 [Glycine soja]
12 Hb_166937_010 0.0157079332 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
13 Hb_001728_090 0.016544166 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
14 Hb_013607_020 0.0173090978 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
15 Hb_064476_010 0.0213072966 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
16 Hb_003549_110 0.0244822153 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
17 Hb_004712_120 0.0246743039 - - Pectinesterase U1 precursor, putative [Ricinus communis]
18 Hb_000243_270 0.0253290414 - - Pectinesterase-2 precursor, putative [Ricinus communis]
19 Hb_001300_110 0.0263596593 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
20 Hb_001504_200 0.0270040581 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]

Gene co-expression network

sample Hb_002081_110 Hb_002081_110 Hb_001031_130 Hb_001031_130 Hb_002081_110--Hb_001031_130 Hb_171420_010 Hb_171420_010 Hb_002081_110--Hb_171420_010 Hb_000042_410 Hb_000042_410 Hb_002081_110--Hb_000042_410 Hb_014549_030 Hb_014549_030 Hb_002081_110--Hb_014549_030 Hb_000185_190 Hb_000185_190 Hb_002081_110--Hb_000185_190 Hb_004994_270 Hb_004994_270 Hb_002081_110--Hb_004994_270 Hb_001031_130--Hb_171420_010 Hb_001031_130--Hb_000042_410 Hb_001031_130--Hb_000185_190 Hb_001031_130--Hb_014549_030 Hb_001031_130--Hb_004994_270 Hb_171420_010--Hb_000042_410 Hb_171420_010--Hb_014549_030 Hb_171420_010--Hb_004994_270 Hb_171420_010--Hb_000185_190 Hb_000042_410--Hb_014549_030 Hb_000042_410--Hb_004994_270 Hb_000042_410--Hb_000185_190 Hb_014549_030--Hb_004994_270 Hb_014549_030--Hb_000185_190 Hb_015754_010 Hb_015754_010 Hb_000185_190--Hb_015754_010 Hb_001579_080 Hb_001579_080 Hb_000185_190--Hb_001579_080 Hb_000771_010 Hb_000771_010 Hb_000185_190--Hb_000771_010 Hb_004994_270--Hb_000185_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.992837 0.533728 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis