Hb_002081_130

Information

Type -
Description -
Location Contig2081: 226977-238468
Sequence    

Annotation

kegg
ID rcu:RCOM_1383950
description serine carboxypeptidase, putative (EC:3.4.16.5)
nr
ID XP_002522137.1
description serine carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q9C7Z9
description Serine carboxypeptidase-like 18 OS=Arabidopsis thaliana GN=SCPL18 PE=2 SV=2
trembl
ID B9S821
description Serine carboxypeptidase, putative OS=Ricinus communis GN=RCOM_1383950 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_130 0.0 - - serine carboxypeptidase, putative [Ricinus communis]
2 Hb_002043_190 0.0578370777 - - rwd domain-containing protein, putative [Ricinus communis]
3 Hb_066182_010 0.0628737946 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
4 Hb_000300_060 0.0652755531 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
5 Hb_003025_020 0.0665490874 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_005993_040 0.0665891838 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
7 Hb_002391_300 0.0710610086 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
8 Hb_000205_160 0.0738863588 - - Peroxisome biogenesis protein 12 [Morus notabilis]
9 Hb_004440_090 0.0743704255 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
10 Hb_000853_170 0.0761007874 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
11 Hb_063090_010 0.0762212958 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
12 Hb_002149_020 0.0812880573 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
13 Hb_015746_010 0.0833116052 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
14 Hb_002233_150 0.0847567734 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
15 Hb_000640_240 0.0859915525 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
16 Hb_005503_030 0.0872023986 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
17 Hb_000926_280 0.0872297528 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
18 Hb_172632_090 0.0876335046 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
19 Hb_000661_250 0.0877346017 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
20 Hb_001571_040 0.0877375213 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]

Gene co-expression network

sample Hb_002081_130 Hb_002081_130 Hb_002043_190 Hb_002043_190 Hb_002081_130--Hb_002043_190 Hb_066182_010 Hb_066182_010 Hb_002081_130--Hb_066182_010 Hb_000300_060 Hb_000300_060 Hb_002081_130--Hb_000300_060 Hb_003025_020 Hb_003025_020 Hb_002081_130--Hb_003025_020 Hb_005993_040 Hb_005993_040 Hb_002081_130--Hb_005993_040 Hb_002391_300 Hb_002391_300 Hb_002081_130--Hb_002391_300 Hb_002043_190--Hb_005993_040 Hb_015746_010 Hb_015746_010 Hb_002043_190--Hb_015746_010 Hb_003126_050 Hb_003126_050 Hb_002043_190--Hb_003126_050 Hb_002233_150 Hb_002233_150 Hb_002043_190--Hb_002233_150 Hb_000041_270 Hb_000041_270 Hb_002043_190--Hb_000041_270 Hb_054865_100 Hb_054865_100 Hb_066182_010--Hb_054865_100 Hb_066182_010--Hb_000300_060 Hb_005276_210 Hb_005276_210 Hb_066182_010--Hb_005276_210 Hb_002149_020 Hb_002149_020 Hb_066182_010--Hb_002149_020 Hb_000640_240 Hb_000640_240 Hb_066182_010--Hb_000640_240 Hb_000300_060--Hb_005276_210 Hb_003097_150 Hb_003097_150 Hb_000300_060--Hb_003097_150 Hb_001571_040 Hb_001571_040 Hb_000300_060--Hb_001571_040 Hb_003010_030 Hb_003010_030 Hb_000300_060--Hb_003010_030 Hb_003025_020--Hb_066182_010 Hb_002067_040 Hb_002067_040 Hb_003025_020--Hb_002067_040 Hb_003025_020--Hb_002149_020 Hb_003025_020--Hb_002043_190 Hb_009838_090 Hb_009838_090 Hb_003025_020--Hb_009838_090 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_011571_020 Hb_011571_020 Hb_005993_040--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_005993_040--Hb_011360_140 Hb_000392_440 Hb_000392_440 Hb_005993_040--Hb_000392_440 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080 Hb_000373_240 Hb_000373_240 Hb_002391_300--Hb_000373_240 Hb_003406_010 Hb_003406_010 Hb_002391_300--Hb_003406_010 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_007218_080 Hb_007218_080 Hb_002391_300--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.696129 0.343909 0.412412 0.296922 1.06048 0.926055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.82116 0.969183 0.548706 0.601832 0.215847

CAGE analysis