Hb_002081_190

Information

Type -
Description -
Location Contig2081: 302602-306556
Sequence    

Annotation

kegg
ID pda:103697951
description serine carboxypeptidase-like 18
nr
ID KCW55069.1
description hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059AMT4
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I010391 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21566: 305424-318842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_190 0.0 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
2 Hb_000128_050 0.0442112187 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000343_220 0.0947268266 - - hypothetical protein CISIN_1g037489mg [Citrus sinensis]
4 Hb_173764_010 0.1013234956 - - protein binding protein, putative [Ricinus communis]
5 Hb_001366_380 0.1164793621 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
6 Hb_002498_290 0.1241213721 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
7 Hb_000272_010 0.1261736814 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
8 Hb_000679_280 0.1281146367 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
9 Hb_030736_030 0.128273242 - - hypothetical protein VITISV_006651 [Vitis vinifera]
10 Hb_000552_030 0.1291996446 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
11 Hb_010053_010 0.1350116861 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
12 Hb_003549_010 0.1400274228 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
13 Hb_001252_050 0.1445379102 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
14 Hb_002559_010 0.1472225306 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
15 Hb_001862_160 0.1512999841 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
16 Hb_006711_040 0.153963101 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
17 Hb_151094_020 0.1549599165 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
18 Hb_135673_010 0.1560796352 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
19 Hb_001006_050 0.1578214359 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
20 Hb_009767_030 0.1601529193 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]

Gene co-expression network

sample Hb_002081_190 Hb_002081_190 Hb_000128_050 Hb_000128_050 Hb_002081_190--Hb_000128_050 Hb_000343_220 Hb_000343_220 Hb_002081_190--Hb_000343_220 Hb_173764_010 Hb_173764_010 Hb_002081_190--Hb_173764_010 Hb_001366_380 Hb_001366_380 Hb_002081_190--Hb_001366_380 Hb_002498_290 Hb_002498_290 Hb_002081_190--Hb_002498_290 Hb_000272_010 Hb_000272_010 Hb_002081_190--Hb_000272_010 Hb_000128_050--Hb_173764_010 Hb_000552_030 Hb_000552_030 Hb_000128_050--Hb_000552_030 Hb_000128_050--Hb_000343_220 Hb_010053_010 Hb_010053_010 Hb_000128_050--Hb_010053_010 Hb_000128_050--Hb_001366_380 Hb_001252_050 Hb_001252_050 Hb_000343_220--Hb_001252_050 Hb_006711_040 Hb_006711_040 Hb_000343_220--Hb_006711_040 Hb_000490_040 Hb_000490_040 Hb_000343_220--Hb_000490_040 Hb_000343_220--Hb_000272_010 Hb_173764_010--Hb_000552_030 Hb_003549_010 Hb_003549_010 Hb_173764_010--Hb_003549_010 Hb_000679_280 Hb_000679_280 Hb_173764_010--Hb_000679_280 Hb_173764_010--Hb_002498_290 Hb_001366_380--Hb_000272_010 Hb_000260_670 Hb_000260_670 Hb_001366_380--Hb_000260_670 Hb_006316_090 Hb_006316_090 Hb_001366_380--Hb_006316_090 Hb_005306_030 Hb_005306_030 Hb_001366_380--Hb_005306_030 Hb_001649_050 Hb_001649_050 Hb_001366_380--Hb_001649_050 Hb_001076_010 Hb_001076_010 Hb_001366_380--Hb_001076_010 Hb_002498_290--Hb_000679_280 Hb_002498_290--Hb_003549_010 Hb_030736_030 Hb_030736_030 Hb_002498_290--Hb_030736_030 Hb_151094_020 Hb_151094_020 Hb_002498_290--Hb_151094_020 Hb_135673_010 Hb_135673_010 Hb_002498_290--Hb_135673_010 Hb_001006_050 Hb_001006_050 Hb_002498_290--Hb_001006_050 Hb_000272_010--Hb_000260_670 Hb_080147_070 Hb_080147_070 Hb_000272_010--Hb_080147_070 Hb_000535_040 Hb_000535_040 Hb_000272_010--Hb_000535_040 Hb_000272_010--Hb_006711_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.216518 10.4233 5.21344 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.16922 0.491211

CAGE analysis