Hb_002081_220

Information

Type -
Description -
Location Contig2081: 318600-331927
Sequence    

Annotation

kegg
ID pda:103707552
description uncharacterized LOC103707552
nr
ID XP_008790306.1
description PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
swissprot
ID Q9C7D6
description Serine carboxypeptidase-like 17 OS=Arabidopsis thaliana GN=SCPL17 PE=2 SV=1
trembl
ID A0A059ANS7
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01035 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21566: 305424-318842 , PASA_asmbl_21567: 323285-325128 , PASA_asmbl_21568: 327291-327403 , PASA_asmbl_21569: 328044-328442 , PASA_asmbl_21570: 329066-331742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_220 0.0 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
2 Hb_010053_010 0.1130609166 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
3 Hb_164300_010 0.1148511701 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
4 Hb_021888_010 0.1310842197 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
5 Hb_001532_060 0.1383126371 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
6 Hb_000101_370 0.1384772079 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
7 Hb_001158_110 0.1510708038 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
8 Hb_001377_480 0.1532772373 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
9 Hb_003119_120 0.1570065106 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
10 Hb_027242_010 0.1572466393 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
11 Hb_111985_120 0.157367336 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
12 Hb_173764_010 0.1611150483 - - protein binding protein, putative [Ricinus communis]
13 Hb_000128_050 0.1618309621 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006573_260 0.1653189784 - - -
15 Hb_000057_210 0.1672512814 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
16 Hb_000552_030 0.1679452529 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
17 Hb_187211_010 0.1688942828 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
18 Hb_027028_010 0.170869806 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
19 Hb_000086_720 0.1742539454 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
20 Hb_002081_190 0.1746810264 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]

Gene co-expression network

sample Hb_002081_220 Hb_002081_220 Hb_010053_010 Hb_010053_010 Hb_002081_220--Hb_010053_010 Hb_164300_010 Hb_164300_010 Hb_002081_220--Hb_164300_010 Hb_021888_010 Hb_021888_010 Hb_002081_220--Hb_021888_010 Hb_001532_060 Hb_001532_060 Hb_002081_220--Hb_001532_060 Hb_000101_370 Hb_000101_370 Hb_002081_220--Hb_000101_370 Hb_001158_110 Hb_001158_110 Hb_002081_220--Hb_001158_110 Hb_000128_050 Hb_000128_050 Hb_010053_010--Hb_000128_050 Hb_000552_030 Hb_000552_030 Hb_010053_010--Hb_000552_030 Hb_024948_010 Hb_024948_010 Hb_010053_010--Hb_024948_010 Hb_010053_010--Hb_164300_010 Hb_002081_190 Hb_002081_190 Hb_010053_010--Hb_002081_190 Hb_164300_010--Hb_000101_370 Hb_000705_090 Hb_000705_090 Hb_164300_010--Hb_000705_090 Hb_000215_420 Hb_000215_420 Hb_164300_010--Hb_000215_420 Hb_164300_010--Hb_024948_010 Hb_021888_010--Hb_001158_110 Hb_006573_260 Hb_006573_260 Hb_021888_010--Hb_006573_260 Hb_001002_090 Hb_001002_090 Hb_021888_010--Hb_001002_090 Hb_009767_030 Hb_009767_030 Hb_021888_010--Hb_009767_030 Hb_000187_110 Hb_000187_110 Hb_021888_010--Hb_000187_110 Hb_004703_010 Hb_004703_010 Hb_001532_060--Hb_004703_010 Hb_001288_020 Hb_001288_020 Hb_001532_060--Hb_001288_020 Hb_001532_060--Hb_021888_010 Hb_000723_050 Hb_000723_050 Hb_001532_060--Hb_000723_050 Hb_001532_060--Hb_009767_030 Hb_000101_370--Hb_000215_420 Hb_001377_480 Hb_001377_480 Hb_000101_370--Hb_001377_480 Hb_027242_010 Hb_027242_010 Hb_000101_370--Hb_027242_010 Hb_000101_370--Hb_006573_260 Hb_000086_720 Hb_000086_720 Hb_001158_110--Hb_000086_720 Hb_001158_110--Hb_001288_020 Hb_001158_110--Hb_000187_110 Hb_001158_110--Hb_001002_090 Hb_072997_010 Hb_072997_010 Hb_001158_110--Hb_072997_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.900283 13.298 3.39151 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0135318 0.0319459 0.0203916 14.1352 0.318448

CAGE analysis