Hb_002084_020

Information

Type -
Description -
Location Contig2084: 49819-53752
Sequence    

Annotation

kegg
ID rcu:RCOM_1406230
description DNA-directed RNA polymerase 3B, chloroplast precursor, putative
nr
ID KDP38713.1
description hypothetical protein JCGZ_04066 [Jatropha curcas]
swissprot
ID Q8L6J1
description DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2
trembl
ID A0A067KUV5
description DNA-directed RNA polymerase OS=Jatropha curcas GN=JCGZ_04066 PE=3 SV=1
Gene Ontology
ID GO:0005739
description dna-directed rna polymerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21584: 49849-64346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002084_020 0.0 - - hypothetical protein JCGZ_04066 [Jatropha curcas]
2 Hb_000836_440 0.0888505451 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_048476_180 0.0896800602 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
4 Hb_003938_080 0.0909435285 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
5 Hb_165928_020 0.0935469889 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
6 Hb_000820_170 0.0942294879 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
7 Hb_000034_040 0.0947214203 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
8 Hb_006915_070 0.0960572441 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
9 Hb_009411_010 0.0981285684 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
10 Hb_154745_010 0.098915254 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_004724_060 0.1000986955 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
12 Hb_000291_050 0.1004194436 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
13 Hb_012098_110 0.1006365929 - - Ribonuclease 3 [Gossypium arboreum]
14 Hb_032458_010 0.1015203833 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
15 Hb_000101_240 0.1022554458 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
16 Hb_002551_070 0.1028985019 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
17 Hb_007805_010 0.1040200402 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
18 Hb_000753_200 0.1047977697 - - PREDICTED: putative ATP-dependent helicase hrq1 [Jatropha curcas]
19 Hb_005731_030 0.1058261875 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
20 Hb_008489_020 0.1058521667 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]

Gene co-expression network

sample Hb_002084_020 Hb_002084_020 Hb_000836_440 Hb_000836_440 Hb_002084_020--Hb_000836_440 Hb_048476_180 Hb_048476_180 Hb_002084_020--Hb_048476_180 Hb_003938_080 Hb_003938_080 Hb_002084_020--Hb_003938_080 Hb_165928_020 Hb_165928_020 Hb_002084_020--Hb_165928_020 Hb_000820_170 Hb_000820_170 Hb_002084_020--Hb_000820_170 Hb_000034_040 Hb_000034_040 Hb_002084_020--Hb_000034_040 Hb_004155_010 Hb_004155_010 Hb_000836_440--Hb_004155_010 Hb_000836_440--Hb_165928_020 Hb_012098_110 Hb_012098_110 Hb_000836_440--Hb_012098_110 Hb_000926_190 Hb_000926_190 Hb_000836_440--Hb_000926_190 Hb_023386_020 Hb_023386_020 Hb_000836_440--Hb_023386_020 Hb_003362_070 Hb_003362_070 Hb_048476_180--Hb_003362_070 Hb_007307_020 Hb_007307_020 Hb_048476_180--Hb_007307_020 Hb_016898_010 Hb_016898_010 Hb_048476_180--Hb_016898_010 Hb_009411_010 Hb_009411_010 Hb_048476_180--Hb_009411_010 Hb_000101_240 Hb_000101_240 Hb_048476_180--Hb_000101_240 Hb_004935_030 Hb_004935_030 Hb_048476_180--Hb_004935_030 Hb_003938_080--Hb_009411_010 Hb_003216_080 Hb_003216_080 Hb_003938_080--Hb_003216_080 Hb_003544_100 Hb_003544_100 Hb_003938_080--Hb_003544_100 Hb_003938_080--Hb_000101_240 Hb_015884_030 Hb_015884_030 Hb_003938_080--Hb_015884_030 Hb_000502_050 Hb_000502_050 Hb_003938_080--Hb_000502_050 Hb_000120_920 Hb_000120_920 Hb_165928_020--Hb_000120_920 Hb_004841_010 Hb_004841_010 Hb_165928_020--Hb_004841_010 Hb_165928_020--Hb_023386_020 Hb_016172_020 Hb_016172_020 Hb_165928_020--Hb_016172_020 Hb_004412_010 Hb_004412_010 Hb_165928_020--Hb_004412_010 Hb_000062_430 Hb_000062_430 Hb_165928_020--Hb_000062_430 Hb_006252_040 Hb_006252_040 Hb_000820_170--Hb_006252_040 Hb_003428_070 Hb_003428_070 Hb_000820_170--Hb_003428_070 Hb_000820_170--Hb_016898_010 Hb_005731_030 Hb_005731_030 Hb_000820_170--Hb_005731_030 Hb_000820_170--Hb_000101_240 Hb_123352_020 Hb_123352_020 Hb_000820_170--Hb_123352_020 Hb_006915_070 Hb_006915_070 Hb_000034_040--Hb_006915_070 Hb_000034_040--Hb_015884_030 Hb_012799_030 Hb_012799_030 Hb_000034_040--Hb_012799_030 Hb_000034_040--Hb_003938_080 Hb_000034_040--Hb_009411_010 Hb_002681_070 Hb_002681_070 Hb_000034_040--Hb_002681_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74581 1.66048 1.03026 0.589958 1.7169 3.54118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60108 1.36385 1.5194 1.18864 2.1078

CAGE analysis