Hb_002085_030

Information

Type -
Description -
Location Contig2085: 58491-70634
Sequence    

Annotation

kegg
ID rcu:RCOM_0893560
description chromodomain helicase DNA binding protein, putative (EC:2.7.11.1)
nr
ID XP_012080911.1
description PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
swissprot
ID F4KBP5
description Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana GN=CHR4 PE=2 SV=1
trembl
ID A0A067K2V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15265 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein chromatin remodeling 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21587: 58630-60138
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002085_030 0.0 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
2 Hb_012305_030 0.0463695946 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
3 Hb_012194_030 0.0485850195 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
4 Hb_003866_080 0.0580995289 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
5 Hb_001767_140 0.0605233672 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
6 Hb_001279_120 0.0607389968 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
7 Hb_000329_370 0.0631903351 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
8 Hb_140049_040 0.0667400787 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
9 Hb_001089_050 0.0668825825 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
10 Hb_000099_040 0.0670933768 - - unnamed protein product [Coffea canephora]
11 Hb_029977_040 0.067986134 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
12 Hb_003470_080 0.0687871915 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
13 Hb_002267_140 0.069535273 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
14 Hb_002329_020 0.0696688637 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
15 Hb_010417_070 0.069887429 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
16 Hb_004483_040 0.0701063814 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
17 Hb_003929_280 0.0704097822 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
18 Hb_002253_080 0.0705834266 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
19 Hb_000069_470 0.0706325526 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
20 Hb_001430_080 0.0710242908 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]

Gene co-expression network

sample Hb_002085_030 Hb_002085_030 Hb_012305_030 Hb_012305_030 Hb_002085_030--Hb_012305_030 Hb_012194_030 Hb_012194_030 Hb_002085_030--Hb_012194_030 Hb_003866_080 Hb_003866_080 Hb_002085_030--Hb_003866_080 Hb_001767_140 Hb_001767_140 Hb_002085_030--Hb_001767_140 Hb_001279_120 Hb_001279_120 Hb_002085_030--Hb_001279_120 Hb_000329_370 Hb_000329_370 Hb_002085_030--Hb_000329_370 Hb_140049_040 Hb_140049_040 Hb_012305_030--Hb_140049_040 Hb_004976_010 Hb_004976_010 Hb_012305_030--Hb_004976_010 Hb_004236_050 Hb_004236_050 Hb_012305_030--Hb_004236_050 Hb_000914_120 Hb_000914_120 Hb_012305_030--Hb_000914_120 Hb_012305_030--Hb_012194_030 Hb_012194_030--Hb_000329_370 Hb_162275_050 Hb_162275_050 Hb_012194_030--Hb_162275_050 Hb_003835_070 Hb_003835_070 Hb_012194_030--Hb_003835_070 Hb_010712_050 Hb_010712_050 Hb_012194_030--Hb_010712_050 Hb_012779_090 Hb_012779_090 Hb_012194_030--Hb_012779_090 Hb_001089_050 Hb_001089_050 Hb_003866_080--Hb_001089_050 Hb_000402_230 Hb_000402_230 Hb_003866_080--Hb_000402_230 Hb_004143_100 Hb_004143_100 Hb_003866_080--Hb_004143_100 Hb_003866_080--Hb_001767_140 Hb_002492_010 Hb_002492_010 Hb_003866_080--Hb_002492_010 Hb_008253_030 Hb_008253_030 Hb_001767_140--Hb_008253_030 Hb_002253_080 Hb_002253_080 Hb_001767_140--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_001767_140--Hb_002267_140 Hb_001767_140--Hb_140049_040 Hb_000174_060 Hb_000174_060 Hb_001767_140--Hb_000174_060 Hb_001545_150 Hb_001545_150 Hb_001279_120--Hb_001545_150 Hb_000099_040 Hb_000099_040 Hb_001279_120--Hb_000099_040 Hb_002329_020 Hb_002329_020 Hb_001279_120--Hb_002329_020 Hb_009150_020 Hb_009150_020 Hb_001279_120--Hb_009150_020 Hb_001279_120--Hb_012194_030 Hb_005489_020 Hb_005489_020 Hb_000329_370--Hb_005489_020 Hb_000329_370--Hb_010712_050 Hb_011537_050 Hb_011537_050 Hb_000329_370--Hb_011537_050 Hb_000441_120 Hb_000441_120 Hb_000329_370--Hb_000441_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5489 17.0629 9.94991 7.33586 8.63892 9.95855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.79495 7.2021 6.86137 8.94159 11.1875

CAGE analysis