Hb_002085_060

Information

Type -
Description -
Location Contig2085: 104526-131612
Sequence    

Annotation

kegg
ID rcu:RCOM_0550240
description hypothetical protein
nr
ID XP_002532612.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LEJ6
description Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2
trembl
ID B9T2Z3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0550240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21593: 107890-108109 , PASA_asmbl_21597: 113179-113875 , PASA_asmbl_21599: 122250-123206 , PASA_asmbl_21600: 124040-124719 , PASA_asmbl_21601: 128518-128883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002085_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000339_060 0.0317683322 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_003638_020 0.0375889541 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
4 Hb_070771_010 0.0387889978 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
5 Hb_003645_040 0.0514551922 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
6 Hb_064047_020 0.059515485 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
7 Hb_002499_030 0.0654990898 - - receptor-kinase, putative [Ricinus communis]
8 Hb_011912_010 0.0686088782 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
9 Hb_001307_180 0.0704315867 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
10 Hb_012633_020 0.0730035396 - - laccase, putative [Ricinus communis]
11 Hb_005614_020 0.0759243914 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
12 Hb_000684_190 0.0783492595 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
13 Hb_000413_030 0.0786773388 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
14 Hb_000645_230 0.0879461651 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
15 Hb_006065_030 0.0887863993 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
16 Hb_003747_160 0.0911128747 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004225_120 0.0912120932 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
18 Hb_001096_010 0.0916694291 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
19 Hb_042083_010 0.094334129 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
20 Hb_002750_030 0.0948458396 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]

Gene co-expression network

sample Hb_002085_060 Hb_002085_060 Hb_000339_060 Hb_000339_060 Hb_002085_060--Hb_000339_060 Hb_003638_020 Hb_003638_020 Hb_002085_060--Hb_003638_020 Hb_070771_010 Hb_070771_010 Hb_002085_060--Hb_070771_010 Hb_003645_040 Hb_003645_040 Hb_002085_060--Hb_003645_040 Hb_064047_020 Hb_064047_020 Hb_002085_060--Hb_064047_020 Hb_002499_030 Hb_002499_030 Hb_002085_060--Hb_002499_030 Hb_000339_060--Hb_003638_020 Hb_000339_060--Hb_070771_010 Hb_000339_060--Hb_002499_030 Hb_071079_040 Hb_071079_040 Hb_000339_060--Hb_071079_040 Hb_000684_190 Hb_000684_190 Hb_000339_060--Hb_000684_190 Hb_003638_020--Hb_070771_010 Hb_003638_020--Hb_002499_030 Hb_001722_110 Hb_001722_110 Hb_003638_020--Hb_001722_110 Hb_005614_020 Hb_005614_020 Hb_003638_020--Hb_005614_020 Hb_001307_180 Hb_001307_180 Hb_070771_010--Hb_001307_180 Hb_011912_010 Hb_011912_010 Hb_070771_010--Hb_011912_010 Hb_070771_010--Hb_003645_040 Hb_003645_040--Hb_001307_180 Hb_012633_020 Hb_012633_020 Hb_003645_040--Hb_012633_020 Hb_003645_040--Hb_011912_010 Hb_003645_040--Hb_064047_020 Hb_000413_030 Hb_000413_030 Hb_064047_020--Hb_000413_030 Hb_064047_020--Hb_011912_010 Hb_002750_030 Hb_002750_030 Hb_064047_020--Hb_002750_030 Hb_064047_020--Hb_070771_010 Hb_001096_010 Hb_001096_010 Hb_002499_030--Hb_001096_010 Hb_002499_030--Hb_005614_020 Hb_002499_030--Hb_070771_010 Hb_003747_160 Hb_003747_160 Hb_002499_030--Hb_003747_160 Hb_001269_160 Hb_001269_160 Hb_002499_030--Hb_001269_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.067899 5.26465 3.11465 81.4291 0.0971084 0.0430028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00505102 0 0.695037 30.1415

CAGE analysis