Hb_002085_070

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2085: 137638-140311
Sequence    

Annotation

kegg
ID rcu:RCOM_0550010
description nucleic acid binding protein, putative
nr
ID XP_002532599.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q944L3
description Protein indeterminate-domain 9 OS=Arabidopsis thaliana GN=IDD9 PE=2 SV=1
trembl
ID B9T2Y0
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0550010 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein jackdaw-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21604: 137560-140254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002085_070 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_001514_100 0.0736741692 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
3 Hb_000521_290 0.0822591804 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
4 Hb_157980_010 0.0840716569 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
5 Hb_000002_100 0.0892078457 - - phosphate transporter [Manihot esculenta]
6 Hb_012018_020 0.0989508566 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
7 Hb_000265_020 0.1022315653 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
8 Hb_004459_110 0.1181373216 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
9 Hb_020648_020 0.1211331312 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
10 Hb_006970_150 0.1218523448 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
11 Hb_000075_110 0.1262820104 - - aldo-keto reductase, putative [Ricinus communis]
12 Hb_006634_080 0.1264028502 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
13 Hb_000996_200 0.1281575728 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Populus euphratica]
14 Hb_111985_060 0.1297919303 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
15 Hb_000223_050 0.1298967268 - - PREDICTED: endochitinase A-like [Jatropha curcas]
16 Hb_000512_080 0.1316068683 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_021596_070 0.1322019556 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
18 Hb_165404_010 0.1346126718 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
19 Hb_011791_010 0.1352034656 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
20 Hb_000338_030 0.1353042365 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]

Gene co-expression network

sample Hb_002085_070 Hb_002085_070 Hb_001514_100 Hb_001514_100 Hb_002085_070--Hb_001514_100 Hb_000521_290 Hb_000521_290 Hb_002085_070--Hb_000521_290 Hb_157980_010 Hb_157980_010 Hb_002085_070--Hb_157980_010 Hb_000002_100 Hb_000002_100 Hb_002085_070--Hb_000002_100 Hb_012018_020 Hb_012018_020 Hb_002085_070--Hb_012018_020 Hb_000265_020 Hb_000265_020 Hb_002085_070--Hb_000265_020 Hb_002294_010 Hb_002294_010 Hb_001514_100--Hb_002294_010 Hb_001514_100--Hb_012018_020 Hb_001514_100--Hb_000002_100 Hb_001514_100--Hb_000521_290 Hb_004230_060 Hb_004230_060 Hb_001514_100--Hb_004230_060 Hb_000521_290--Hb_000002_100 Hb_020648_020 Hb_020648_020 Hb_000521_290--Hb_020648_020 Hb_010921_060 Hb_010921_060 Hb_000521_290--Hb_010921_060 Hb_000338_030 Hb_000338_030 Hb_000521_290--Hb_000338_030 Hb_000996_200 Hb_000996_200 Hb_157980_010--Hb_000996_200 Hb_006634_080 Hb_006634_080 Hb_157980_010--Hb_006634_080 Hb_111985_060 Hb_111985_060 Hb_157980_010--Hb_111985_060 Hb_157980_010--Hb_001514_100 Hb_004459_110 Hb_004459_110 Hb_157980_010--Hb_004459_110 Hb_000002_100--Hb_012018_020 Hb_000177_130 Hb_000177_130 Hb_000002_100--Hb_000177_130 Hb_000002_100--Hb_010921_060 Hb_012018_020--Hb_000265_020 Hb_006970_150 Hb_006970_150 Hb_012018_020--Hb_006970_150 Hb_033045_010 Hb_033045_010 Hb_012018_020--Hb_033045_010 Hb_000265_020--Hb_033045_010 Hb_000489_020 Hb_000489_020 Hb_000265_020--Hb_000489_020 Hb_000265_020--Hb_006970_150 Hb_000265_020--Hb_000521_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128844 79.0231 18.4742 8.31394 0.0462725 0.0866959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0548388 0.0143839 0 28.6574 5.86607

CAGE analysis