Hb_002085_090

Information

Type -
Description -
Location Contig2085: 152373-154930
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002085_090 0.0 - - -
2 Hb_004855_020 0.1285312447 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
3 Hb_010868_040 0.1302626987 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
4 Hb_000926_040 0.135278546 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
5 Hb_000227_400 0.143224884 - - lipoxygenase, putative [Ricinus communis]
6 Hb_000320_040 0.1433975583 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000009_420 0.1437090342 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
8 Hb_005582_030 0.1472192947 - - PREDICTED: protein N-lysine methyltransferase METTL21A-like [Jatropha curcas]
9 Hb_001922_110 0.1488408968 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000416_190 0.1488920245 - - -
11 Hb_000027_170 0.1549798442 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
12 Hb_002095_050 0.1586369085 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
13 Hb_000243_060 0.1616986916 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
14 Hb_014068_010 0.1653346704 - - PREDICTED: phototropin-1 [Jatropha curcas]
15 Hb_003688_220 0.1658043023 - - unknown [Populus trichocarpa]
16 Hb_000207_350 0.1681753324 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
17 Hb_003398_040 0.1686880949 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
18 Hb_007101_040 0.1694401598 - - PREDICTED: MLP-like protein 423 [Populus euphratica]
19 Hb_002463_050 0.1704104188 - - conserved hypothetical protein [Ricinus communis]
20 Hb_014361_170 0.1706361367 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]

Gene co-expression network

sample Hb_002085_090 Hb_002085_090 Hb_004855_020 Hb_004855_020 Hb_002085_090--Hb_004855_020 Hb_010868_040 Hb_010868_040 Hb_002085_090--Hb_010868_040 Hb_000926_040 Hb_000926_040 Hb_002085_090--Hb_000926_040 Hb_000227_400 Hb_000227_400 Hb_002085_090--Hb_000227_400 Hb_000320_040 Hb_000320_040 Hb_002085_090--Hb_000320_040 Hb_000009_420 Hb_000009_420 Hb_002085_090--Hb_000009_420 Hb_004855_020--Hb_010868_040 Hb_000207_350 Hb_000207_350 Hb_004855_020--Hb_000207_350 Hb_004855_020--Hb_000227_400 Hb_010381_040 Hb_010381_040 Hb_004855_020--Hb_010381_040 Hb_001104_150 Hb_001104_150 Hb_004855_020--Hb_001104_150 Hb_001123_310 Hb_001123_310 Hb_004855_020--Hb_001123_310 Hb_010868_040--Hb_000227_400 Hb_000940_030 Hb_000940_030 Hb_010868_040--Hb_000940_030 Hb_010868_040--Hb_000207_350 Hb_000243_060 Hb_000243_060 Hb_010868_040--Hb_000243_060 Hb_010868_040--Hb_010381_040 Hb_000926_040--Hb_010868_040 Hb_006816_250 Hb_006816_250 Hb_000926_040--Hb_006816_250 Hb_000926_040--Hb_000243_060 Hb_000926_040--Hb_010381_040 Hb_000926_040--Hb_004855_020 Hb_004102_080 Hb_004102_080 Hb_000926_040--Hb_004102_080 Hb_001922_110 Hb_001922_110 Hb_000227_400--Hb_001922_110 Hb_000227_400--Hb_000207_350 Hb_000958_120 Hb_000958_120 Hb_000227_400--Hb_000958_120 Hb_000227_400--Hb_000243_060 Hb_003688_220 Hb_003688_220 Hb_000320_040--Hb_003688_220 Hb_001638_120 Hb_001638_120 Hb_000320_040--Hb_001638_120 Hb_007130_020 Hb_007130_020 Hb_000320_040--Hb_007130_020 Hb_000002_370 Hb_000002_370 Hb_000320_040--Hb_000002_370 Hb_001235_160 Hb_001235_160 Hb_000320_040--Hb_001235_160 Hb_003398_040 Hb_003398_040 Hb_000009_420--Hb_003398_040 Hb_000753_110 Hb_000753_110 Hb_000009_420--Hb_000753_110 Hb_000416_190 Hb_000416_190 Hb_000009_420--Hb_000416_190 Hb_000310_060 Hb_000310_060 Hb_000009_420--Hb_000310_060 Hb_000009_420--Hb_010868_040 Hb_003299_020 Hb_003299_020 Hb_000009_420--Hb_003299_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153433 0.543599 1.77773 0.877456 0 0.0457625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.119306 0.0937425 0 0.426016 0.711782

CAGE analysis